Search of human proteins with 110624783

Search of human proteins with 110624783

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|110624783 putative membrane protein HE9 [Homo sapiens]
         (273 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|110624783 putative membrane protein HE9 [Homo sapiens]             563   e-161
gi|8922243 transmembrane protein 45A [Homo sapiens]                    91   1e-18
gi|20270331 transmembrane protein 45B [Homo sapiens]                   86   5e-17

>gi|110624783 putative membrane protein HE9 [Homo sapiens]
          Length = 273

 Score =  563 bits (1451), Expect = e-161
 Identities = 273/273 (100%), Positives = 273/273 (100%)

Query: 1   MILKGCLLYPLCSPRNKQRCARLWKIAYGGLLKIVTGSLLTFYVVLCLDGGMVLMRKQVP 60
           MILKGCLLYPLCSPRNKQRCARLWKIAYGGLLKIVTGSLLTFYVVLCLDGGMVLMRKQVP
Sbjct: 1   MILKGCLLYPLCSPRNKQRCARLWKIAYGGLLKIVTGSLLTFYVVLCLDGGMVLMRKQVP 60

Query: 61  SRFMYPKEWQHLTMFILLTLNGCVDFMSKNVLPQRCVGLEKGTLVLIIYELLLLMVSHVK 120
           SRFMYPKEWQHLTMFILLTLNGCVDFMSKNVLPQRCVGLEKGTLVLIIYELLLLMVSHVK
Sbjct: 61  SRFMYPKEWQHLTMFILLTLNGCVDFMSKNVLPQRCVGLEKGTLVLIIYELLLLMVSHVK 120

Query: 121 DSEGVELHVYSLLILVVFLLLLVLTAELWAPNMCHLQLMETFLILMMGSWLMQAGFILYR 180
           DSEGVELHVYSLLILVVFLLLLVLTAELWAPNMCHLQLMETFLILMMGSWLMQAGFILYR
Sbjct: 121 DSEGVELHVYSLLILVVFLLLLVLTAELWAPNMCHLQLMETFLILMMGSWLMQAGFILYR 180

Query: 181 PVSGYPWQDDDISDIMFVTTFFCWHVMINASFLLGIYGFSSFWYHCFRPSLKLTGPKEAP 240
           PVSGYPWQDDDISDIMFVTTFFCWHVMINASFLLGIYGFSSFWYHCFRPSLKLTGPKEAP
Sbjct: 181 PVSGYPWQDDDISDIMFVTTFFCWHVMINASFLLGIYGFSSFWYHCFRPSLKLTGPKEAP 240

Query: 241 YYASTPGPLYKLLQEVEQSEKEDQALLLPKSSP 273
           YYASTPGPLYKLLQEVEQSEKEDQALLLPKSSP
Sbjct: 241 YYASTPGPLYKLLQEVEQSEKEDQALLLPKSSP 273


>gi|8922243 transmembrane protein 45A [Homo sapiens]
          Length = 275

 Score = 90.5 bits (223), Expect = 1e-18
 Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 5/153 (3%)

Query: 69  WQHLTMFILLTLNGCVDFMSKNV--LPQRCVGLEKGTLVLIIYELLLLMVSHVKDSEGVE 126
           W H TM+    L G  D +   +  LP   V L K  L   ++    +  +H    E ++
Sbjct: 93  WHHFTMYFFFGLLGVADILCFTISSLP---VSLTKLMLSNALFVEAFIFYNHTHGREMLD 149

Query: 127 LHVYSLLILVVFLLLLVLTAELWAPNMCHLQLMETFLILMMGSWLMQAGFILYRPVSGYP 186
           + V+ LL+LVVFL  LV   E    N   L+L+ + LIL+ GSW  Q GF+LY P  G  
Sbjct: 150 IFVHQLLVLVVFLTGLVAFLEFLVRNNVLLELLRSSLILLQGSWFFQIGFVLYPPSGGPA 209

Query: 187 WQDDDISDIMFVTTFFCWHVMINASFLLGIYGF 219
           W   D  +I+F+T  FCWH  +    +   Y F
Sbjct: 210 WDLMDHENILFLTICFCWHYAVTIVIVGMNYAF 242


>gi|20270331 transmembrane protein 45B [Homo sapiens]
          Length = 275

 Score = 85.5 bits (210), Expect = 5e-17
 Identities = 45/170 (26%), Positives = 87/170 (51%), Gaps = 5/170 (2%)

Query: 69  WQHLTMFILLTLNGCVDFMSKNVLPQRCVGLEKGTLVLIIYELLLLMVSHVKDSEGVELH 128
           WQH TM++   ++G VD ++  ++    +G+++  + + ++    L   HV +   ++ H
Sbjct: 87  WQHSTMYLFFAVSGIVDMLTY-LVSHVPLGVDRLVMAVAVFMEGFLFYYHVHNRPPLDQH 145

Query: 129 VYSLLILVVFLLLLVLTAELWAPNMCHLQLMETFLILMMGSWLMQAGFILYRPVSGYPWQ 188
           ++SLL+  +F   + ++ E+   +   L+L  T LI++ G+W  Q GF+L+ P     W 
Sbjct: 146 IHSLLLYALFGGCVSISLEVIFRDHIVLELFRTSLIILQGTWFWQIGFVLFPPFGTPEWD 205

Query: 189 DDDISDIMFVTTFFCWHVMINASFLLGIYGFSSFWYHCFRPSLKLTGPKE 238
             D +++MF+T  FCWH +   S +   Y       +C    +K  G  E
Sbjct: 206 QKDDANLMFITMCFCWHYLAALSIVAVNYSL----VYCLLTRMKRHGRGE 251


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.329    0.143    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,562,044
Number of Sequences: 37866
Number of extensions: 443494
Number of successful extensions: 1297
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 3
length of query: 273
length of database: 18,247,518
effective HSP length: 101
effective length of query: 172
effective length of database: 14,423,052
effective search space: 2480764944
effective search space used: 2480764944
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.