Search of human proteins with 16554604

Search of human proteins with 16554604

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|16554604 mitochondrial ribosomal protein S23 [Homo sapiens]
         (190 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|16554604 mitochondrial ribosomal protein S23 [Homo sapiens]        386   e-108
gi|13129128 hypothetical protein LOC79095 [Homo sapiens]               31   0.73 
gi|38045915 pregnancy-associated plasma protein A preproprotein ...    30   1.6  
gi|218749883 alpha 1,2-mannosidase [Homo sapiens]                      28   3.6  
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi...    28   6.2  
gi|34878777 ring finger protein 20 [Homo sapiens]                      28   6.2  
gi|37595555 ring finger protein 125 [Homo sapiens]                     28   6.2  
gi|4503357 docking protein 1 [Homo sapiens]                            27   8.1  

>gi|16554604 mitochondrial ribosomal protein S23 [Homo sapiens]
          Length = 190

 Score =  386 bits (992), Expect = e-108
 Identities = 190/190 (100%), Positives = 190/190 (100%)

Query: 1   MAGSRLETVGSIFSRTRDLVRAGVLKEKPLWFDVYDAFPPLREPVFQRPRVRYGKAKAPI 60
           MAGSRLETVGSIFSRTRDLVRAGVLKEKPLWFDVYDAFPPLREPVFQRPRVRYGKAKAPI
Sbjct: 1   MAGSRLETVGSIFSRTRDLVRAGVLKEKPLWFDVYDAFPPLREPVFQRPRVRYGKAKAPI 60

Query: 61  QDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQKLGETDEEKLFVE 120
           QDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQKLGETDEEKLFVE
Sbjct: 61  QDIWYHEDRIRAKFYSVYGSGQRAFDLFNPNFKSTCQRFVEKYTELQKLGETDEEKLFVE 120

Query: 121 TGKALLAEGVILRRVGEARTQHGGSHVSRKSEHLSVRPQTALEENETQKEVPQDQHLEAP 180
           TGKALLAEGVILRRVGEARTQHGGSHVSRKSEHLSVRPQTALEENETQKEVPQDQHLEAP
Sbjct: 121 TGKALLAEGVILRRVGEARTQHGGSHVSRKSEHLSVRPQTALEENETQKEVPQDQHLEAP 180

Query: 181 ADQSKGLLPP 190
           ADQSKGLLPP
Sbjct: 181 ADQSKGLLPP 190


>gi|13129128 hypothetical protein LOC79095 [Homo sapiens]
          Length = 83

 Score = 30.8 bits (68), Expect = 0.73
 Identities = 16/39 (41%), Positives = 21/39 (53%)

Query: 146 HVSRKSEHLSVRPQTALEENETQKEVPQDQHLEAPADQS 184
           H+  K++HL  R Q  LE N   +   Q Q  EAP+D S
Sbjct: 44  HLEEKNDHLHARLQELLESNRQTRLEFQQQLGEAPSDAS 82


>gi|38045915 pregnancy-associated plasma protein A preproprotein [Homo
            sapiens]
          Length = 1627

 Score = 29.6 bits (65), Expect = 1.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 64   WYHEDRIRAKFYS----VYGSGQRAFDLFNPNFKSTCQR 98
            +YH   +R  F S    + G   R+FD F+P   S+CQR
Sbjct: 1156 FYHSQAVRVSFSSPLVAISGVALRSFDNFDPVTLSSCQR 1194


>gi|218749883 alpha 1,2-mannosidase [Homo sapiens]
          Length = 699

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 137 EARTQHGGSHVSRKSEHLSVRPQTALEENETQKEVPQDQHLEAPAD 182
           E  +Q    H+ R   HL +RP +   ++ TQ+E  + Q  EAP D
Sbjct: 151 EISSQKTQRHIQRGPPHLQIRPPSQDLKDGTQEEATKRQ--EAPVD 194


>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
           sapiens]
          Length = 1341

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)

Query: 105 ELQKLGETDEEKLFVETGKALLAEGVILRRVGE-ARTQHGG--SHVSRKSEHLSVRPQTA 161
           E +++     E++  E  K    E  +L R G   R+Q     SH++R+ +   ++  + 
Sbjct: 307 EGEEIPRVKPEEMMDERPKTRSQEQEVLERGGRFTRSQEEARKSHLARQQQEKEMKTTSP 366

Query: 162 LEENETQKEVPQDQHLEAPADQSKGLLPP 190
           LEE E  +E+   Q L+   ++SK   PP
Sbjct: 367 LEEEE--REIKSSQGLK---EKSKSPSPP 390


>gi|34878777 ring finger protein 20 [Homo sapiens]
          Length = 975

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 17/75 (22%)

Query: 68  DRIRAKFYSVYGSGQ-----------RAFDLFNPNFKSTCQRFVEKYTELQKLGE----- 111
           +R+ +K Y VYG+G            R F+  N   +   +    +  EL+KL +     
Sbjct: 297 ERVNSKGYKVYGAGSSLYGGTITINARKFEEMNAELEENKELAQNRLCELEKLRQDFEEV 356

Query: 112 -TDEEKLFVETGKAL 125
            T  EKL VE   A+
Sbjct: 357 TTQNEKLKVELRSAV 371


>gi|37595555 ring finger protein 125 [Homo sapiens]
          Length = 232

 Score = 27.7 bits (60), Expect = 6.2
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 95  TCQRFVEKYTELQKLGET 112
           TCQ++++KY  LQ+L ET
Sbjct: 118 TCQKYIDKYGPLQELEET 135


>gi|4503357 docking protein 1 [Homo sapiens]
          Length = 481

 Score = 27.3 bits (59), Expect = 8.1
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 23/75 (30%)

Query: 23  GVLKEKPLWFDVYD----------AFPPLREPVFQRPRVRYGKAKAPIQ----------D 62
           GV ++KPL++D+Y+             P  +P++  P    G A  P Q          D
Sbjct: 329 GVQRKKPLYWDLYEHAQQQLLKAKLTDPKEDPIYDEPE---GLAPVPPQGLYDLPREPKD 385

Query: 63  IWYHEDRIRAKFYSV 77
            W+ + R++ + Y +
Sbjct: 386 AWWCQARVKEEGYEL 400


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,426,715
Number of Sequences: 37866
Number of extensions: 323042
Number of successful extensions: 924
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 921
Number of HSP's gapped (non-prelim): 8
length of query: 190
length of database: 18,247,518
effective HSP length: 96
effective length of query: 94
effective length of database: 14,612,382
effective search space: 1373563908
effective search space used: 1373563908
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.