Search of human proteins with 156564357

Search of human proteins with 156564357

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|156564357 NAD(P)H dehydrogenase, quinone 2 [Homo sapiens]
         (231 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|156564357 NAD(P)H dehydrogenase, quinone 2 [Homo sapiens]          479   e-135
gi|4505415 NAD(P)H menadione oxidoreductase 1, dioxin-inducible ...   220   9e-58
gi|70995396 NAD(P)H menadione oxidoreductase 1, dioxin-inducible...   167   5e-42
gi|70995422 NAD(P)H menadione oxidoreductase 1, dioxin-inducible...   158   3e-39
gi|45827716 ADP-ribosylation factor guanine nucleotide factor 6 ...    28   5.1  
gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6...    28   5.1  

>gi|156564357 NAD(P)H dehydrogenase, quinone 2 [Homo sapiens]
          Length = 231

 Score =  479 bits (1232), Expect = e-135
 Identities = 231/231 (100%), Positives = 231/231 (100%)

Query: 1   MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60
           MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL
Sbjct: 1   MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60

Query: 61  SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120
           SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV
Sbjct: 61  SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120

Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180
           LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC
Sbjct: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180

Query: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ 231
           GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ
Sbjct: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPIPCTAHWHFGQ 231


>gi|4505415 NAD(P)H menadione oxidoreductase 1, dioxin-inducible
           isoform a [Homo sapiens]
          Length = 274

 Score =  220 bits (560), Expect = 9e-58
 Identities = 107/221 (48%), Positives = 140/221 (63%)

Query: 1   MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60
           M G++ LIV AH E  SFN ++K  A   L ++G  V  SDLYAMN  P  + KDITG L
Sbjct: 1   MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60

Query: 61  SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120
            +P  F Y  E+  AYK+  L+ DI  EQKK+  ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61  KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120

Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180
               FA+     YD G  + K A+LS+TTGG+  MY+  G++GD    LWP+Q G LHFC
Sbjct: 121 FIGEFAYTYAAMYDKGPFRSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 180

Query: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221
           GF+VL PQ++++      + R  ++  W +RL+ IW E P+
Sbjct: 181 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPL 221


>gi|70995396 NAD(P)H menadione oxidoreductase 1, dioxin-inducible
           isoform b [Homo sapiens]
          Length = 240

 Score =  167 bits (424), Expect = 5e-42
 Identities = 91/221 (41%), Positives = 117/221 (52%), Gaps = 34/221 (15%)

Query: 1   MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60
           M G++ LIV AH E  SFN ++K  A   L ++G  V  SDLYAMN  P  + KDITG L
Sbjct: 1   MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60

Query: 61  SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120
            +P  F Y  E+  AYK+  L+ DI  EQKK+  ADLVIFQFPL WF VPAILKGW +RV
Sbjct: 61  KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIFQFPLQWFGVPAILKGWFERV 120

Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180
               FA+     YD G                                  P + G LHFC
Sbjct: 121 FIGEFAYTYAAMYDKG----------------------------------PFRSGILHFC 146

Query: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221
           GF+VL PQ++++      + R  ++  W +RL+ IW E P+
Sbjct: 147 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPL 187


>gi|70995422 NAD(P)H menadione oxidoreductase 1, dioxin-inducible
           isoform c [Homo sapiens]
          Length = 236

 Score =  158 bits (400), Expect = 3e-39
 Identities = 87/221 (39%), Positives = 117/221 (52%), Gaps = 38/221 (17%)

Query: 1   MAGKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAMNLEPRATDKDITGTL 60
           M G++ LIV AH E  SFN ++K  A   L ++G  V  SDLYAMN  P  + KDITG L
Sbjct: 1   MVGRRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAMNFNPIISRKDITGKL 60

Query: 61  SNPEVFNYGVETHEAYKQRSLASDITDEQKKVREADLVIFQFPLYWFSVPAILKGWMDRV 120
            +P  F Y  E+  AYK+  L+ DI  EQKK+  ADLVIF                    
Sbjct: 61  KDPANFQYPAESVLAYKEGHLSPDIVAEQKKLEAADLVIF-------------------- 100

Query: 121 LCQGFAFDIPGFYDSGLLQGKLALLSVTTGGTAEMYTKTGVNGDSRYFLWPLQHGTLHFC 180
                             Q K A+LS+TTGG+  MY+  G++GD    LWP+Q G LHFC
Sbjct: 101 ------------------QSKKAVLSITTGGSGSMYSLQGIHGDMNVILWPIQSGILHFC 142

Query: 181 GFKVLAPQISFAPEIASEEERKGMVAAWSQRLQTIWKEEPI 221
           GF+VL PQ++++      + R  ++  W +RL+ IW E P+
Sbjct: 143 GFQVLEPQLTYSIGHTPADARIQILEGWKKRLENIWDETPL 183


>gi|45827716 ADP-ribosylation factor guanine nucleotide factor 6
           isoform b [Homo sapiens]
          Length = 513

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 80  SLASDITDEQKKVREADLVIFQFPLYWFSV--PAILKGWMDRVLCQGFAFDIPGF 132
           +LAS  TD +KK     L    + +  F    P  ++GW++++ C    F  P F
Sbjct: 316 ALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWINKINCVAAVFSAPPF 370


>gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6
           isoform a [Homo sapiens]
          Length = 1047

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 80  SLASDITDEQKKVREADLVIFQFPLYWFSV--PAILKGWMDRVLCQGFAFDIPGF 132
           +LAS  TD +KK     L    + +  F    P  ++GW++++ C    F  P F
Sbjct: 850 ALASKATDYEKKPNVFKLKTADWRVLLFQTQSPEEMQGWINKINCVAAVFSAPPF 904


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,914,018
Number of Sequences: 37866
Number of extensions: 363478
Number of successful extensions: 740
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 8
length of query: 231
length of database: 18,247,518
effective HSP length: 99
effective length of query: 132
effective length of database: 14,498,784
effective search space: 1913839488
effective search space used: 1913839488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.