Search of human proteins with 154959417

Search of human proteins with 154959417

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|154959417 cervical cancer suppressor-1 [Homo sapiens]
         (79 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|154959419 cervical cancer suppressor-1 [Homo sapiens]              163   2e-41
gi|154959417 cervical cancer suppressor-1 [Homo sapiens]              163   2e-41
gi|4757840 BCL2-related protein A1 isoform 1 [Homo sapiens]            61   2e-10
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s...    27   3.5  
gi|96975023 ankyrin repeat and death domain containing 1A [Homo ...    26   7.9  

>gi|154959419 cervical cancer suppressor-1 [Homo sapiens]
          Length = 79

 Score =  163 bits (413), Expect = 2e-41
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MARSRLTATSVSQVQENGFVKKLEPKSGWMTFLEVTGKICEMLFCPEAILLTRKDTPYCE 60
          MARSRLTATSVSQVQENGFVKKLEPKSGWMTFLEVTGKICEMLFCPEAILLTRKDTPYCE
Sbjct: 1  MARSRLTATSVSQVQENGFVKKLEPKSGWMTFLEVTGKICEMLFCPEAILLTRKDTPYCE 60

Query: 61 TGLIFLTLTKTIANTYFYF 79
          TGLIFLTLTKTIANTYFYF
Sbjct: 61 TGLIFLTLTKTIANTYFYF 79


>gi|154959417 cervical cancer suppressor-1 [Homo sapiens]
          Length = 79

 Score =  163 bits (413), Expect = 2e-41
 Identities = 79/79 (100%), Positives = 79/79 (100%)

Query: 1  MARSRLTATSVSQVQENGFVKKLEPKSGWMTFLEVTGKICEMLFCPEAILLTRKDTPYCE 60
          MARSRLTATSVSQVQENGFVKKLEPKSGWMTFLEVTGKICEMLFCPEAILLTRKDTPYCE
Sbjct: 1  MARSRLTATSVSQVQENGFVKKLEPKSGWMTFLEVTGKICEMLFCPEAILLTRKDTPYCE 60

Query: 61 TGLIFLTLTKTIANTYFYF 79
          TGLIFLTLTKTIANTYFYF
Sbjct: 61 TGLIFLTLTKTIANTYFYF 79


>gi|4757840 BCL2-related protein A1 isoform 1 [Homo sapiens]
          Length = 175

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 27/28 (96%), Positives = 27/28 (96%)

Query: 16  ENGFVKKLEPKSGWMTFLEVTGKICEML 43
           ENGFVKK EPKSGWMTFLEVTGKICEML
Sbjct: 141 ENGFVKKFEPKSGWMTFLEVTGKICEML 168


>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
           sapiens]
          Length = 326

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/15 (80%), Positives = 13/15 (86%)

Query: 1   MARSRLTATSVSQVQ 15
           MARSR TATS SQ+Q
Sbjct: 303 MARSRFTATSTSQIQ 317


>gi|96975023 ankyrin repeat and death domain containing 1A [Homo
           sapiens]
          Length = 522

 Score = 25.8 bits (55), Expect = 7.9
 Identities = 12/15 (80%), Positives = 14/15 (93%)

Query: 1   MARSRLTATSVSQVQ 15
           MARS+LTATS S+VQ
Sbjct: 499 MARSQLTATSASRVQ 513


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,634,849
Number of Sequences: 37866
Number of extensions: 88154
Number of successful extensions: 283
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 5
length of query: 79
length of database: 18,247,518
effective HSP length: 51
effective length of query: 28
effective length of database: 16,316,352
effective search space: 456857856
effective search space used: 456857856
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.