Search of human proteins with 14861858

Search of human proteins with 14861858

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|14861858 hypothetical protein LOC85411 [Homo sapiens]
         (136 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|14861858 hypothetical protein LOC85411 [Homo sapiens]              291   9e-80
gi|4557501 cathepsin O preproprotein [Homo sapiens]                    28   1.8  
gi|126032338 ryanodine receptor 3 [Homo sapiens]                       28   3.0  
gi|13540606 caseinolytic peptidase B [Homo sapiens]                    28   3.0  
gi|10190748 CEGP1 protein [Homo sapiens]                               27   6.7  
gi|24497620 signal recognition particle 68kDa [Homo sapiens]           27   6.7  

>gi|14861858 hypothetical protein LOC85411 [Homo sapiens]
          Length = 136

 Score =  291 bits (746), Expect = 9e-80
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MGDSRRDVLHEPAIALLSSPQTQSRLQIDAFIARRCWGSQWDITGYIHQQDFPTAVFIGF 60
           MGDSRRDVLHEPAIALLSSPQTQSRLQIDAFIARRCWGSQWDITGYIHQQDFPTAVFIGF
Sbjct: 1   MGDSRRDVLHEPAIALLSSPQTQSRLQIDAFIARRCWGSQWDITGYIHQQDFPTAVFIGF 60

Query: 61  SNEFNICIPHPFTEWLQCVRKYSQSWGVRKGQRHIRYGMCSERTHHLSRTYSSLLEREEK 120
           SNEFNICIPHPFTEWLQCVRKYSQSWGVRKGQRHIRYGMCSERTHHLSRTYSSLLEREEK
Sbjct: 61  SNEFNICIPHPFTEWLQCVRKYSQSWGVRKGQRHIRYGMCSERTHHLSRTYSSLLEREEK 120

Query: 121 LAFYGVLTMCQIWSET 136
           LAFYGVLTMCQIWSET
Sbjct: 121 LAFYGVLTMCQIWSET 136


>gi|4557501 cathepsin O preproprotein [Homo sapiens]
          Length = 321

 Score = 28.5 bits (62), Expect = 1.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 31  FIARRCWGSQWDITGYIH 48
           +I R  WGS W + GY H
Sbjct: 285 WIVRNSWGSSWGVDGYAH 302


>gi|126032338 ryanodine receptor 3 [Homo sapiens]
          Length = 4870

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 62   NEFNICIPHPFTEWLQCVRKYSQ----SWGVRKGQRHIRYGMCSE---RTHHLSRTYSSL 114
            N  N  +P    E++  V KY++     W   K Q   +YG+  +   +TH L R + +L
Sbjct: 2604 NTMNFSLPEKL-EYI--VTKYAEHSHDKWACDKSQSGWKYGISLDENVKTHPLIRPFKTL 2660

Query: 115  LEREEKL 121
             E+E+++
Sbjct: 2661 TEKEKEI 2667


>gi|13540606 caseinolytic peptidase B [Homo sapiens]
          Length = 707

 Score = 27.7 bits (60), Expect = 3.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 57  FIGFSNEFNICIPHPFTEWLQCVRKYSQSWGVRKGQRH 94
           F+G  NE    +P   +E +Q V K    W  R  QRH
Sbjct: 558 FLGRINEIVYFLPFCHSELIQLVNKELNFWAKRAKQRH 595


>gi|10190748 CEGP1 protein [Homo sapiens]
          Length = 999

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 34  RRCWGSQWDITGYIHQQDFP 53
           RRC G   D TGYI   ++P
Sbjct: 807 RRCGGELGDFTGYIESPNYP 826


>gi|24497620 signal recognition particle 68kDa [Homo sapiens]
          Length = 627

 Score = 26.6 bits (57), Expect = 6.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 74  EWLQCVRKYSQSWGVRKGQRHIRYGMCSERTHHLSRTYSSLLEREEK 120
           E LQ +++  Q  G+R G      G CS R   L +T +  +    K
Sbjct: 61  EILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHK 107


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.136    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,694,488
Number of Sequences: 37866
Number of extensions: 234089
Number of successful extensions: 474
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 469
Number of HSP's gapped (non-prelim): 6
length of query: 136
length of database: 18,247,518
effective HSP length: 91
effective length of query: 45
effective length of database: 14,801,712
effective search space: 666077040
effective search space used: 666077040
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.