Search of human proteins with 93141042

Search of human proteins with 93141042

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|93141042 ADMP [Homo sapiens]
         (76 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|93141042 ADMP [Homo sapiens]                                       163   3e-41
gi|115527094 hypothetical protein LOC171546 [Homo sapiens]             71   2e-13
gi|239747432 PREDICTED: hypothetical LOC100131965 [Homo sapiens]       46   7e-06
gi|110347427 ubiquitin specific protease 34 [Homo sapiens]             26   6.1  

>gi|93141042 ADMP [Homo sapiens]
          Length = 76

 Score =  163 bits (412), Expect = 3e-41
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHIRLA 60
          MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHIRLA
Sbjct: 1  MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHIRLA 60

Query: 61 WEFFSKICGYHSTISN 76
          WEFFSKICGYHSTISN
Sbjct: 61 WEFFSKICGYHSTISN 76


>gi|115527094 hypothetical protein LOC171546 [Homo sapiens]
          Length = 71

 Score = 71.2 bits (173), Expect = 2e-13
 Identities = 29/64 (45%), Positives = 44/64 (68%)

Query: 1  MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHIRLA 60
          M L R  +  SW YYQY +++   +LEPWER++FN++L++I+ M +YT YVF+P HI   
Sbjct: 4  MALARAWKQMSWFYYQYLLVTALYMLEPWERTVFNSMLVSIVGMALYTGYVFMPQHIMAI 63

Query: 61 WEFF 64
            +F
Sbjct: 64 LHYF 67


>gi|239747432 PREDICTED: hypothetical LOC100131965 [Homo sapiens]
          Length = 189

 Score = 45.8 bits (107), Expect = 7e-06
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)

Query: 1   MDLRRVKEYFSWLYYQYQIISCCAVLEPWERSMFNTILLTIIAMVVYTAYVFIPIHIRLA 60
           M+L R  +  SW YYQ+ +++   +LEP ER + N+ L++I     Y  Y+F+  HI   
Sbjct: 126 MELVRAWKXMSWFYYQHLLVTMLYMLEPEERKVLNSTLVSI----XYAGYIFMTQHIMAI 181

Query: 61  WEFF 64
             +F
Sbjct: 182 LHYF 185


>gi|110347427 ubiquitin specific protease 34 [Homo sapiens]
          Length = 3546

 Score = 26.2 bits (56), Expect = 6.1
 Identities = 10/36 (27%), Positives = 22/36 (61%)

Query: 40   TIIAMVVYTAYVFIPIHIRLAWEFFSKICGYHSTIS 75
            T++ + V  AY  +P+H+ L  + ++++C   S +S
Sbjct: 3165 TLVKLSVLVAYEGLPLHLALFPKLWTELCQTQSAMS 3200


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.334    0.142    0.483 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,623,005
Number of Sequences: 37866
Number of extensions: 77321
Number of successful extensions: 290
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 4
length of query: 76
length of database: 18,247,518
effective HSP length: 48
effective length of query: 28
effective length of database: 16,429,950
effective search space: 460038600
effective search space used: 460038600
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.