Search of human proteins with 92859618

Search of human proteins with 92859618

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|92859618 sphingomyelin phosphodiesterase 2, neutral [Homo
sapiens]
         (423 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|92859618 sphingomyelin phosphodiesterase 2, neutral [Homo sap...   882   0.0  
gi|37595553 ring finger protein 111 [Homo sapiens]                     32   0.83 
gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]                      30   5.4  
gi|8923477 transmembrane protein 160 [Homo sapiens]                    30   5.4  
gi|168229226 hypothetical protein LOC401399 [Homo sapiens]             29   9.2  

>gi|92859618 sphingomyelin phosphodiesterase 2, neutral [Homo
           sapiens]
          Length = 423

 Score =  882 bits (2279), Expect = 0.0
 Identities = 423/423 (100%), Positives = 423/423 (100%)

Query: 1   MKPNFSLRLRIFNLNCWGIPYLSKHRADRMRRLGDFLNQESFDLALLEEVWSEQDFQYLR 60
           MKPNFSLRLRIFNLNCWGIPYLSKHRADRMRRLGDFLNQESFDLALLEEVWSEQDFQYLR
Sbjct: 1   MKPNFSLRLRIFNLNCWGIPYLSKHRADRMRRLGDFLNQESFDLALLEEVWSEQDFQYLR 60

Query: 61  QKLSPTYPAAHHFRSGIIGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGL 120
           QKLSPTYPAAHHFRSGIIGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGL
Sbjct: 61  QKLSPTYPAAHHFRSGIIGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGL 120

Query: 121 LVLHLSGMVLNAYVTHLHAEYNRQKDIYLAHRVAQAWELAQFIHHTSKKADVVLLCGDLN 180
           LVLHLSGMVLNAYVTHLHAEYNRQKDIYLAHRVAQAWELAQFIHHTSKKADVVLLCGDLN
Sbjct: 121 LVLHLSGMVLNAYVTHLHAEYNRQKDIYLAHRVAQAWELAQFIHHTSKKADVVLLCGDLN 180

Query: 181 MHPEDLGCCLLKEWTGLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYV 240
           MHPEDLGCCLLKEWTGLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYV
Sbjct: 181 MHPEDLGCCLLKEWTGLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYV 240

Query: 241 LYKAVSGFYISCKSFETTTGFDPHRGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERS 300
           LYKAVSGFYISCKSFETTTGFDPHRGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERS
Sbjct: 241 LYKAVSGFYISCKSFETTTGFDPHRGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERS 300

Query: 301 PLMCVLKEAWTELGLGMAQARWWATFASYVIGLGLLLLALLCVLAAGGGAGEAAILLWTP 360
           PLMCVLKEAWTELGLGMAQARWWATFASYVIGLGLLLLALLCVLAAGGGAGEAAILLWTP
Sbjct: 301 PLMCVLKEAWTELGLGMAQARWWATFASYVIGLGLLLLALLCVLAAGGGAGEAAILLWTP 360

Query: 361 SVGLVLWAGAFYLFHVQEVNGLYRAQAELQHVLGRAREAQDLGPEPQPALLLGQQEGDRT 420
           SVGLVLWAGAFYLFHVQEVNGLYRAQAELQHVLGRAREAQDLGPEPQPALLLGQQEGDRT
Sbjct: 361 SVGLVLWAGAFYLFHVQEVNGLYRAQAELQHVLGRAREAQDLGPEPQPALLLGQQEGDRT 420

Query: 421 KEQ 423
           KEQ
Sbjct: 421 KEQ 423


>gi|37595553 ring finger protein 111 [Homo sapiens]
          Length = 986

 Score = 32.3 bits (72), Expect = 0.83
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 236 RIDYVLYKAVSGFYISCKSFETTTGFDPHRGTPLSDHEALMATLFVRHSPPQQNPSSTHG 295
           ++DYV+   V  F+    S  T+    P    P   H A  A    +H PP   P S H 
Sbjct: 680 QVDYVIPHPVHAFHSQISSHATSHPVAP----PPPTHLASTAAPIPQHLPPTHQPISHHI 735

Query: 296 PAERSP 301
           PA   P
Sbjct: 736 PATAPP 741


>gi|45505130 TAO kinase 2 isoform 2 [Homo sapiens]
          Length = 1235

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 24/41 (58%), Positives = 25/41 (60%), Gaps = 2/41 (4%)

Query: 333  LGLLLLALLCVLAAGGGAGEAAILLWTPSVGLVLWAGAFYL 373
            L LLLL LL +LAA GG G  A LL    VGLV   GA YL
Sbjct: 966  LPLLLLLLLPLLAAQGGGGLQAALL-ALEVGLV-GLGASYL 1004


>gi|8923477 transmembrane protein 160 [Homo sapiens]
          Length = 188

 Score = 29.6 bits (65), Expect = 5.4
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 3/43 (6%)

Query: 327 ASYVIGLGLLLLALLCVL---AAGGGAGEAAILLWTPSVGLVL 366
           ASY +GL  L   +   L   A G GA  AA LLW  +VGL +
Sbjct: 115 ASYAVGLAALRGPMQLTLGGAAVGAGAVLAASLLWACAVGLYM 157


>gi|168229226 hypothetical protein LOC401399 [Homo sapiens]
          Length = 899

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 8/53 (15%)

Query: 296 PAERSPLMCVLKEA-WTELGLGMAQARWWATFASYVIGLGLL--LLALLCVLA 345
           P    PL  +  EA W E     A+ARW   + ++V G+G L  L+ALL +LA
Sbjct: 337 PEAPRPLFFLTLEADWAE-----ARARWGLAWEAHVYGVGALFGLVALLALLA 384


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,943,404
Number of Sequences: 37866
Number of extensions: 867315
Number of successful extensions: 1881
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1877
Number of HSP's gapped (non-prelim): 7
length of query: 423
length of database: 18,247,518
effective HSP length: 105
effective length of query: 318
effective length of database: 14,271,588
effective search space: 4538364984
effective search space used: 4538364984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.