Search of human proteins with 8922625

Search of human proteins with 8922625

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8922625 trimethyllysine hydroxylase, epsilon [Homo sapiens]
         (421 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8922625 trimethyllysine hydroxylase, epsilon [Homo sapiens]        895   0.0  
gi|4502369 gamma-butyrobetaine dioxygenase [Homo sapiens]             164   1e-40
gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens]           30   4.1  
gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo ...    30   4.1  
gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo ...    30   4.1  

>gi|8922625 trimethyllysine hydroxylase, epsilon [Homo sapiens]
          Length = 421

 Score =  895 bits (2313), Expect = 0.0
 Identities = 421/421 (100%), Positives = 421/421 (100%)

Query: 1   MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF 60
           MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
Sbjct: 1   MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF 60

Query: 61  ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW 120
           ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
Sbjct: 61  ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW 120

Query: 121 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF 180
           PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
Sbjct: 121 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF 180

Query: 181 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD 240
           LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
Sbjct: 181 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD 240

Query: 241 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE 300
           RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
Sbjct: 241 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE 300

Query: 301 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRYNNYDRAVINTVPYDVVHRWYTAHRTLT 360
           YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRYNNYDRAVINTVPYDVVHRWYTAHRTLT
Sbjct: 301 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRYNNYDRAVINTVPYDVVHRWYTAHRTLT 360

Query: 361 IELRRPENEFWVKLKPGRVLFIDNWRVLHGRECFTGYRQLCGCYLTRDDVLNTARLLGLQ 420
           IELRRPENEFWVKLKPGRVLFIDNWRVLHGRECFTGYRQLCGCYLTRDDVLNTARLLGLQ
Sbjct: 361 IELRRPENEFWVKLKPGRVLFIDNWRVLHGRECFTGYRQLCGCYLTRDDVLNTARLLGLQ 420

Query: 421 A 421
           A
Sbjct: 421 A 421


>gi|4502369 gamma-butyrobetaine dioxygenase [Homo sapiens]
          Length = 387

 Score =  164 bits (415), Expect = 1e-40
 Identities = 101/354 (28%), Positives = 163/354 (46%), Gaps = 16/354 (4%)

Query: 74  VWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWL 133
           VWLRD+C  + CY      R L   ++D+ I  K +  D   ++ TWPD H +++  +WL
Sbjct: 32  VWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDRKKVYITWPDEHYSEFQADWL 91

Query: 134 VKNSYEGQKQKVIQPRIL------WNAEIYQQAQVPSVDCQSFLETNEGLKKFLQNFLLY 187
            K  +  Q +  +Q  +       W +E+    Q+P++D +  L  +E   K+L      
Sbjct: 92  KKRCFSKQARAKLQRELFFPECQYWGSEL----QLPTLDFEDVLRYDEHAYKWLSTLKKV 147

Query: 188 GIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALDRHTDTTY 247
           GI  +           KL +R+  +  T YG  W         + AYT   L  HTD   
Sbjct: 148 GIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHTWQVQDKIDANNVAYTTGKLSFHTDYPA 207

Query: 248 FQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHEYIEDVGE 307
              P G+Q+ HC+K   TGG + +VDGF   +++ +  P+ F++LS   +    I  V  
Sbjct: 208 LHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDI-GVDY 266

Query: 308 CHNHMIGIGPVLNIYPWNKELYLIRYNNYDRAVINTVPYDVVHRWYTAHRTLTIELRRPE 367
           C   +     ++ +     ++  I +NN  R  I  VP + V  +Y A +     +   E
Sbjct: 267 CDFSVQSKHKIIELDD-KGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKE 325

Query: 368 NEFWVKLKPGRVLFIDNWRVLHGRECFTG----YRQLCGCYLTRDDVLNTARLL 417
           ++F  K+ PG V+  DNWR+LHGR  +       R L G Y   D V++  R+L
Sbjct: 326 SKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWDVVMSRLRIL 379


>gi|239753545 PREDICTED: similar to hCG2041452 [Homo sapiens]
          Length = 410

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 67  TVMRFDYVWLRDHCRSASCYNSKT 90
           T + F   W+ DH R ASC NSKT
Sbjct: 384 TEVSFYKKWIIDHLRQASCLNSKT 407


>gi|239748117 PREDICTED: hypothetical protein XP_002346556 [Homo
           sapiens]
          Length = 410

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 67  TVMRFDYVWLRDHCRSASCYNSKT 90
           T + F   W+ DH R ASC NSKT
Sbjct: 384 TEVSFYKKWIIDHLRQASCLNSKT 407


>gi|239742016 PREDICTED: hypothetical protein XP_002342392 [Homo
           sapiens]
          Length = 410

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 67  TVMRFDYVWLRDHCRSASCYNSKT 90
           T + F   W+ DH R ASC NSKT
Sbjct: 384 TEVSFYKKWIIDHLRQASCLNSKT 407


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.138    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,015,299
Number of Sequences: 37866
Number of extensions: 741520
Number of successful extensions: 1321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1314
Number of HSP's gapped (non-prelim): 5
length of query: 421
length of database: 18,247,518
effective HSP length: 105
effective length of query: 316
effective length of database: 14,271,588
effective search space: 4509821808
effective search space used: 4509821808
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.