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Search of human proteins with 8659559
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|8659559 transmembrane protein 50B [Homo sapiens]
(158 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|8659559 transmembrane protein 50B [Homo sapiens] 333 3e-92
gi|7657595 small membrane protein 1 [Homo sapiens] 242 1e-64
gi|221139836 hypothetical protein LOC84830 isoform 1 [Homo sapiens] 35 0.027
gi|14249372 hypothetical protein LOC84830 isoform 2 [Homo sapiens] 35 0.027
gi|59709427 XK, Kell blood group complex subunit-related family,... 31 0.38
gi|223278347 C-type lectin domain family 4, member M isoform 9 [... 30 1.1
gi|223278344 C-type lectin domain family 4, member M isoform 10 ... 30 1.1
gi|223278337 C-type lectin domain family 4, member M isoform 12 ... 30 1.1
gi|223278350 C-type lectin domain family 4, member M isoform 8 [... 30 1.1
gi|42542390 C-type lectin domain family 4, member M isoform 1 [H... 30 1.1
gi|89886484 XK, Kell blood group complex subunit-related family,... 28 4.3
>gi|8659559 transmembrane protein 50B [Homo sapiens]
Length = 158
Score = 333 bits (855), Expect = 3e-92
Identities = 158/158 (100%), Positives = 158/158 (100%)
Query: 1 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT
Sbjct: 1 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
Query: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA
Sbjct: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
Query: 121 YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT 158
YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT
Sbjct: 121 YVTQNTDVYPGLAVFFQNALIFFSTLIYKFGRTEELWT 158
>gi|7657595 small membrane protein 1 [Homo sapiens]
Length = 157
Score = 242 bits (617), Expect = 1e-64
Identities = 109/158 (68%), Positives = 130/158 (82%), Gaps = 3/158 (1%)
Query: 1 MAGFLDNFRWPECECIDWSERRNAVASVVAGILFFTGWWIMIDAAVVYPKPEQLNHAFHT 60
M+GFL+ R EC IDW E+RN +AS+ AG+LFFTGWWI+IDAAV+YP + NH++H
Sbjct: 1 MSGFLEGLRCSEC--IDWGEKRNTIASIAAGVLFFTGWWIIIDAAVIYPTMKDFNHSYHA 58
Query: 61 CGVFSTLAFFMINAVSNAQVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIASMWILFGA 120
CGV +T+AF MINAVSN QVRGDSY GCLG+TGAR+WLF+GFML FGSLIASMWILFG
Sbjct: 59 CGVIATIAFLMINAVSNGQVRGDSYSEGCLGQTGARIWLFVGFMLAFGSLIASMWILFGG 118
Query: 121 YVTQNTD-VYPGLAVFFQNALIFFSTLIYKFGRTEELW 157
YV + D VYPG+AVFFQNA IFF L++KFGRTE+LW
Sbjct: 119 YVAKEKDIVYPGIAVFFQNAFIFFGGLVFKFGRTEDLW 156
>gi|221139836 hypothetical protein LOC84830 isoform 1 [Homo sapiens]
Length = 248
Score = 35.0 bits (79), Expect = 0.027
Identities = 38/139 (27%), Positives = 54/139 (38%), Gaps = 36/139 (25%)
Query: 35 FTGWWIMI--DAAVVYPK------PEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYE 86
F +WI+ + ++YPK P LNHA HT F ++ +R SY
Sbjct: 117 FLAFWILFLYNRDLIYPKVLDTVIPVWLNHAMHT--------FIFPITLAEVVLRPHSYP 168
Query: 87 SGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNTDVYP--------GLAVFFQN 138
S G T L+ + IA + + Y T VYP GLA FF
Sbjct: 169 SKKTGLT-----------LLAAASIAYISRILWLYFETGTWVYPVFAKLSLLGLAAFFSL 217
Query: 139 ALIFFSTLIYKFGRTEELW 157
+ +F ++ IY G W
Sbjct: 218 SYVFIAS-IYLLGEKLNHW 235
>gi|14249372 hypothetical protein LOC84830 isoform 2 [Homo sapiens]
Length = 230
Score = 35.0 bits (79), Expect = 0.027
Identities = 38/139 (27%), Positives = 54/139 (38%), Gaps = 36/139 (25%)
Query: 35 FTGWWIMI--DAAVVYPK------PEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYE 86
F +WI+ + ++YPK P LNHA HT F ++ +R SY
Sbjct: 99 FLAFWILFLYNRDLIYPKVLDTVIPVWLNHAMHT--------FIFPITLAEVVLRPHSYP 150
Query: 87 SGCLGRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNTDVYP--------GLAVFFQN 138
S G T L+ + IA + + Y T VYP GLA FF
Sbjct: 151 SKKTGLT-----------LLAAASIAYISRILWLYFETGTWVYPVFAKLSLLGLAAFFSL 199
Query: 139 ALIFFSTLIYKFGRTEELW 157
+ +F ++ IY G W
Sbjct: 200 SYVFIAS-IYLLGEKLNHW 217
>gi|59709427 XK, Kell blood group complex subunit-related family,
member 4 [Homo sapiens]
Length = 650
Score = 31.2 bits (69), Expect = 0.38
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 91 GRTGARVWLFIGFMLMFGSLIASMWILFGAYVTQNTDVYPGLAVFFQNAL--IFFSTLIY 148
GRT R++++ +L+ + ++++W L+ A + P L V F + L + F + Y
Sbjct: 451 GRTRCRLFIYYFVILLENTALSALWYLYKAPQIADAFAIPALCVVFSSFLTGVVFMLMYY 510
Query: 149 KF 150
F
Sbjct: 511 AF 512
>gi|223278347 C-type lectin domain family 4, member M isoform 9
[Homo sapiens]
Length = 353
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 79 QVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIA 112
Q+ G +GCLG GA V + FML+ G L+A
Sbjct: 35 QIHGHKSSTGCLGH-GALVLQLLSFMLLAGVLVA 67
>gi|223278344 C-type lectin domain family 4, member M isoform 10
[Homo sapiens]
Length = 232
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 79 QVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIA 112
Q+ G +GCLG GA V + FML+ G L+A
Sbjct: 35 QIHGHKSSTGCLGH-GALVLQLLSFMLLAGVLVA 67
>gi|223278337 C-type lectin domain family 4, member M isoform 12
[Homo sapiens]
Length = 375
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 79 QVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIA 112
Q+ G +GCLG GA V + FML+ G L+A
Sbjct: 34 QIHGHKSSTGCLGH-GALVLQLLSFMLLAGVLVA 66
>gi|223278350 C-type lectin domain family 4, member M isoform 8
[Homo sapiens]
Length = 376
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 79 QVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIA 112
Q+ G +GCLG GA V + FML+ G L+A
Sbjct: 35 QIHGHKSSTGCLGH-GALVLQLLSFMLLAGVLVA 67
>gi|42542390 C-type lectin domain family 4, member M isoform 1 [Homo
sapiens]
Length = 399
Score = 29.6 bits (65), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 79 QVRGDSYESGCLGRTGARVWLFIGFMLMFGSLIA 112
Q+ G +GCLG GA V + FML+ G L+A
Sbjct: 35 QIHGHKSSTGCLGH-GALVLQLLSFMLLAGVLVA 67
>gi|89886484 XK, Kell blood group complex subunit-related family,
member 6 isoform b [Homo sapiens]
Length = 641
Score = 27.7 bits (60), Expect = 4.3
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 97 VWLFIGFMLMFGSLIASMWILFGAYVTQNTDVYPGLAVFF 136
+W+ + ++ FG + +W+ Y + VY GL +FF
Sbjct: 130 LWIVLALLVFFGDVGTDLWLALD-YYRKGDYVYFGLTLFF 168
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.330 0.141 0.481
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,564,260
Number of Sequences: 37866
Number of extensions: 196326
Number of successful extensions: 474
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 12
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.