Search of human proteins with 8051611

Search of human proteins with 8051611

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|8051611 KDEL receptor 3 isoform b [Homo sapiens]
         (220 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|8051611 KDEL receptor 3 isoform b [Homo sapiens]                   443   e-125
gi|6857802 KDEL receptor 3 isoform a [Homo sapiens]                   404   e-113
gi|5803050 KDEL receptor 2 isoform 1 [Homo sapiens]                   319   1e-87
gi|5803048 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein ...   307   4e-84
gi|89062505 PREDICTED: similar to KDEL receptor [Homo sapiens]        181   6e-46
gi|154736713 KDEL receptor 2 isoform 2 [Homo sapiens]                 171   6e-43

>gi|8051611 KDEL receptor 3 isoform b [Homo sapiens]
          Length = 220

 Score =  443 bits (1140), Expect = e-125
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60
           MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN
Sbjct: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60

Query: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120
           TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW
Sbjct: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120

Query: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
           TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180

Query: 181 VVSGVVQTIFYCDFFYLYVTKGRSWDDSNADTGLRSYSSI 220
           VVSGVVQTIFYCDFFYLYVTKGRSWDDSNADTGLRSYSSI
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTKGRSWDDSNADTGLRSYSSI 220


>gi|6857802 KDEL receptor 3 isoform a [Homo sapiens]
          Length = 214

 Score =  404 bits (1039), Expect = e-113
 Identities = 201/201 (100%), Positives = 201/201 (100%)

Query: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60
           MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN
Sbjct: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60

Query: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120
           TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW
Sbjct: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120

Query: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
           TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180

Query: 181 VVSGVVQTIFYCDFFYLYVTK 201
           VVSGVVQTIFYCDFFYLYVTK
Sbjct: 181 VVSGVVQTIFYCDFFYLYVTK 201


>gi|5803050 KDEL receptor 2 isoform 1 [Homo sapiens]
          Length = 212

 Score =  319 bits (817), Expect = 1e-87
 Identities = 152/201 (75%), Positives = 178/201 (88%)

Query: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60
           MN+FR+ GDLSHL A+++LL KIW+++ C GISGKSQ+LFALVFTTRYLDLFT+FIS+YN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120
           T MKV++L C+Y TVY+IY KF+ T+D  +DTFR+EFL+VPV GLSFL N+ F+ LEILW
Sbjct: 61  TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLEILW 120

Query: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
           TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYL NWI R+  E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLVNWIWRFYFEGFFDLIA 180

Query: 181 VVSGVVQTIFYCDFFYLYVTK 201
           VV+GVVQTI YCDFFYLY+TK
Sbjct: 181 VVAGVVQTILYCDFFYLYITK 201


>gi|5803048 KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein
           retention receptor 1 [Homo sapiens]
          Length = 212

 Score =  307 bits (787), Expect = 4e-84
 Identities = 144/201 (71%), Positives = 174/201 (86%)

Query: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60
           MN+FR LGDLSHLLA+ILLL KIW+S+ C GISGKSQ+LFA+VFT RYLDLFTN+IS+YN
Sbjct: 1   MNLFRFLGDLSHLLAIILLLLKIWKSRSCAGISGKSQVLFAVVFTARYLDLFTNYISLYN 60

Query: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLEILW 120
           T MKVV++ C++ TV++IY KF+ T+D  +DTFR+EFL+VP   L+FL N+ FT LEILW
Sbjct: 61  TCMKVVYIACSFTTVWLIYSKFKATYDGNHDTFRVEFLVVPTAILAFLVNHDFTPLEILW 120

Query: 121 TFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENFYDQIA 180
           TFSIYLESVAILPQLFM+SKTGEAETIT+HYLF LG+YR LYL NWI RY  E F+D IA
Sbjct: 121 TFSIYLESVAILPQLFMVSKTGEAETITSHYLFALGVYRTLYLFNWIWRYHFEGFFDLIA 180

Query: 181 VVSGVVQTIFYCDFFYLYVTK 201
           +V+G+VQT+ YCDFFYLY+TK
Sbjct: 181 IVAGLVQTVLYCDFFYLYITK 201


>gi|89062505 PREDICTED: similar to KDEL receptor [Homo sapiens]
          Length = 219

 Score =  181 bits (458), Expect = 6e-46
 Identities = 92/206 (44%), Positives = 137/206 (66%), Gaps = 5/206 (2%)

Query: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60
           M + R++GD+ HL A+++LL K+ R +   GIS KS  LFA+VF TRY+D+  +FI IYN
Sbjct: 1   MALVRVVGDMLHLSAILILLSKMLRQRSAAGISLKSMELFAIVFCTRYIDVLFSFIGIYN 60

Query: 61  TVMKVVFLLCAYVTVYMIYGK--FRKTFDSENDTFRLEFLLVPVIGLSFLENYS---FTL 115
           T MK+ F+       Y++  K  ++ T+D ENDTFR+ +L+VP + LS L + +     +
Sbjct: 61  TTMKIFFIASTLHICYLMKFKSPWKATYDRENDTFRIRYLIVPCVVLSILFHGTPRRSIV 120

Query: 116 LEILWTFSIYLESVAILPQLFMISKTGEAETITTHYLFFLGLYRALYLANWIRRYQTENF 175
           +E+ WTFS YLE+VAILPQ+F++  T   + +T+HYLF LG YR +Y+ +W  RY   + 
Sbjct: 121 IELCWTFSQYLEAVAILPQIFLLEYTERYDALTSHYLFCLGAYRVVYMIHWAIRYYIYHK 180

Query: 176 YDQIAVVSGVVQTIFYCDFFYLYVTK 201
              I+V+SG VQ++ Y DFFY YV +
Sbjct: 181 VRWISVLSGFVQSLLYVDFFYHYVVQ 206


>gi|154736713 KDEL receptor 2 isoform 2 [Homo sapiens]
          Length = 186

 Score =  171 bits (432), Expect = 6e-43
 Identities = 79/117 (67%), Positives = 101/117 (86%)

Query: 1   MNVFRILGDLSHLLAMILLLGKIWRSKCCKGISGKSQILFALVFTTRYLDLFTNFISIYN 60
           MN+FR+ GDLSHL A+++LL KIW+++ C GISGKSQ+LFALVFTTRYLDLFT+FIS+YN
Sbjct: 1   MNIFRLTGDLSHLAAIVILLLKIWKTRSCAGISGKSQLLFALVFTTRYLDLFTSFISLYN 60

Query: 61  TVMKVVFLLCAYVTVYMIYGKFRKTFDSENDTFRLEFLLVPVIGLSFLENYSFTLLE 117
           T MKV++L C+Y TVY+IY KF+ T+D  +DTFR+EFL+VPV GLSFL N+ F+ LE
Sbjct: 61  TSMKVIYLACSYATVYLIYLKFKATYDGNHDTFRVEFLVVPVGGLSFLVNHDFSPLE 117


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.331    0.144    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,966,082
Number of Sequences: 37866
Number of extensions: 260327
Number of successful extensions: 619
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 6
length of query: 220
length of database: 18,247,518
effective HSP length: 98
effective length of query: 122
effective length of database: 14,536,650
effective search space: 1773471300
effective search space used: 1773471300
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.