Search of human proteins with 71999151

Search of human proteins with 71999151

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|71999151 sperm associated antigen 11B isoform B precursor
[Homo sapiens]
         (50 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|71999151 sperm associated antigen 11B isoform B precursor [Ho...   109   4e-25
gi|7706551 sperm associated antigen 11B isoform A preproprotein ...    75   1e-14
gi|126091070 sperm associated antigen 11B isoform E precursor [H...    40   5e-04
gi|240255505 potassium channel, subfamily T, member 1 [Homo sapi...    28   1.6  

>gi|71999151 sperm associated antigen 11B isoform B precursor
          [Homo sapiens]
          Length = 50

 Score =  109 bits (273), Expect = 4e-25
 Identities = 50/50 (100%), Positives = 50/50 (100%)

Query: 1  MKVFFLFAVLFCLVQTNSVHISHREARGPSFRICVDFLGPRWARGCSTGN 50
          MKVFFLFAVLFCLVQTNSVHISHREARGPSFRICVDFLGPRWARGCSTGN
Sbjct: 1  MKVFFLFAVLFCLVQTNSVHISHREARGPSFRICVDFLGPRWARGCSTGN 50


>gi|7706551 sperm associated antigen 11B isoform A preproprotein
           [Homo sapiens]
          Length = 103

 Score = 74.7 bits (182), Expect = 1e-14
 Identities = 32/32 (100%), Positives = 32/32 (100%)

Query: 19  VHISHREARGPSFRICVDFLGPRWARGCSTGN 50
           VHISHREARGPSFRICVDFLGPRWARGCSTGN
Sbjct: 72  VHISHREARGPSFRICVDFLGPRWARGCSTGN 103


>gi|126091070 sperm associated antigen 11B isoform E precursor
          [Homo sapiens]
          Length = 80

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)

Query: 1  MKVFFLFAVLFCLVQTNS 18
          MKVFFLFAVLFCLVQTNS
Sbjct: 1  MKVFFLFAVLFCLVQTNS 18


>gi|240255505 potassium channel, subfamily T, member 1 [Homo
           sapiens]
          Length = 1235

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 2   KVFFLFAVLFCLVQTNSVHISHREARGPSFRICVDF 37
           +V  LF  L CLV T +  I H E  G +  +   F
Sbjct: 270 QVLILFCTLLCLVFTGTCGIQHLERAGENLSLLTSF 305


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.335    0.144    0.499 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,007,774
Number of Sequences: 37866
Number of extensions: 52544
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 4
length of query: 50
length of database: 18,247,518
effective HSP length: 24
effective length of query: 26
effective length of database: 17,338,734
effective search space: 450807084
effective search space used: 450807084
T: 11
A: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.