Guide to the Human Genome
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Name: SPAG11B Sequence: fasta or formatted (50aa) NCBI GI: 71999151
Description:

sperm associated antigen 11B isoform B precursor

Referenced in:

Testes and Sperm

Other entries for this name:
alt prot [108aa] sperm associated antigen 11B isoform G preproprotein
alt prot [80aa] sperm associated antigen 11B isoform E precursor
alt prot [133aa] sperm associated antigen 11B isoform D preproprotein
alt prot [82aa] sperm associated antigen 11B isoform H preproprotein
alt prot [113aa] sperm associated antigen 11B isoform C preproprotein
alt prot [103aa] sperm associated antigen 11B isoform A preproprotein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0          3           1
 C cysteine            6.0          3           1
 D aspartate           2.0          1           1
 E glutamate           2.0          1           1
 F phenylalanine      12.0          6           2
 G glycine             8.0          4           1
 H histidine           4.0          2           1
 I isoleucine          4.0          2           1
 K lysine              2.0          1           1
 L leucine             8.0          4           1
 M methionine          2.0          1           1
 N asparagine          4.0          2           1
 P proline             4.0          2           1
 Q glutamine           2.0          1           1
 R arginine           10.0          5           1
 S serine              8.0          4           1
 T threonine           4.0          2           1
 V valine             10.0          5           1
 W tryptophan          2.0          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sperm associated antigen 11B isoform B precursor [Ho... 
SPAG11B               0.595   sperm associated antigen 11B isoform A preproprotein ...
SPAG11B               0.179   sperm associated antigen 11B isoform E precursor [H...
KCNT1                 0.036   potassium channel, subfamily T, member 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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