Search of human proteins with 71067089

Search of human proteins with 71067089

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|71067089 hypothetical protein LOC285343 isoform 2 [Homo
sapiens]
         (70 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|71067089 hypothetical protein LOC285343 isoform 2 [Homo sapiens]   158   1e-39
gi|71067098 hypothetical protein LOC285343 isoform 2 [Homo sapiens]   158   1e-39
gi|150378505 hypothetical protein LOC285343 isoform 1 [Homo sapi...   125   9e-30
gi|114431236 zinc finger protein 462 [Homo sapiens]                    26   7.7  

>gi|71067089 hypothetical protein LOC285343 isoform 2 [Homo
          sapiens]
          Length = 70

 Score =  158 bits (399), Expect = 1e-39
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVERDDTWK 60
          MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVERDDTWK
Sbjct: 1  MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVERDDTWK 60

Query: 61 SFQCPSDFSL 70
          SFQCPSDFSL
Sbjct: 61 SFQCPSDFSL 70


>gi|71067098 hypothetical protein LOC285343 isoform 2 [Homo
          sapiens]
          Length = 70

 Score =  158 bits (399), Expect = 1e-39
 Identities = 70/70 (100%), Positives = 70/70 (100%)

Query: 1  MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVERDDTWK 60
          MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVERDDTWK
Sbjct: 1  MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVERDDTWK 60

Query: 61 SFQCPSDFSL 70
          SFQCPSDFSL
Sbjct: 61 SFQCPSDFSL 70


>gi|150378505 hypothetical protein LOC285343 isoform 1 [Homo
          sapiens]
          Length = 496

 Score =  125 bits (313), Expect = 9e-30
 Identities = 55/56 (98%), Positives = 56/56 (100%)

Query: 1  MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVERD 56
          MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVER+
Sbjct: 1  MFCHLRPMRRLCLEKIFPHWFPFSRALSGAEAVNALRPFYFAVHPDFFGQHPVERE 56


>gi|114431236 zinc finger protein 462 [Homo sapiens]
          Length = 2506

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 21  FPFSRALSGAEAVNALRPFYFAVHPDFFGQH-PVERDDTWKSFQC 64
           F  +  LSG  A +     Y+   P ++GQH       T K FQC
Sbjct: 66  FAIAEDLSGQNATSLGTGGYYGHSPGYYGQHIAANPKPTNKFFQC 110


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.333    0.144    0.523 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,017,623
Number of Sequences: 37866
Number of extensions: 100023
Number of successful extensions: 345
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 342
Number of HSP's gapped (non-prelim): 4
length of query: 70
length of database: 18,247,518
effective HSP length: 43
effective length of query: 27
effective length of database: 16,619,280
effective search space: 448720560
effective search space used: 448720560
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.