Search of human proteins with 13654276

Search of human proteins with 13654276

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13654276 queuine tRNA-ribosyltransferase 1 [Homo sapiens]
         (403 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13654276 queuine tRNA-ribosyltransferase 1 [Homo sapiens]          820   0.0  
gi|13375872 queuine tRNA-ribosyltransferase domain containing 1 ...    96   6e-20
gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens]        30   3.0  
gi|54792138 helicase with zinc finger domain [Homo sapiens]            30   5.1  

>gi|13654276 queuine tRNA-ribosyltransferase 1 [Homo sapiens]
          Length = 403

 Score =  820 bits (2119), Expect = 0.0
 Identities = 403/403 (100%), Positives = 403/403 (100%)

Query: 1   MAGAATQASLESAPRIMRLVAECSRSRARAGELWLPHGTVATPVFMPVGTQATMKGITTE 60
           MAGAATQASLESAPRIMRLVAECSRSRARAGELWLPHGTVATPVFMPVGTQATMKGITTE
Sbjct: 1   MAGAATQASLESAPRIMRLVAECSRSRARAGELWLPHGTVATPVFMPVGTQATMKGITTE 60

Query: 61  QLDALGCRICLGNTYHLGLRPGPELIQKANGLHGFMNWPHNLLTDSGGFQMVSLVSLSEV 120
           QLDALGCRICLGNTYHLGLRPGPELIQKANGLHGFMNWPHNLLTDSGGFQMVSLVSLSEV
Sbjct: 61  QLDALGCRICLGNTYHLGLRPGPELIQKANGLHGFMNWPHNLLTDSGGFQMVSLVSLSEV 120

Query: 121 TEEGVRFRSPYDGNETLLSPEKSVQIQNALGSDIIMQLDDVVSSTVTGPRVEEAMYRSIR 180
           TEEGVRFRSPYDGNETLLSPEKSVQIQNALGSDIIMQLDDVVSSTVTGPRVEEAMYRSIR
Sbjct: 121 TEEGVRFRSPYDGNETLLSPEKSVQIQNALGSDIIMQLDDVVSSTVTGPRVEEAMYRSIR 180

Query: 181 WLDRCIAAHQRPDKQNLFAIIQGGLDADLRATCLEEMTKRDVPGFAIGGLSGGESKSQFW 240
           WLDRCIAAHQRPDKQNLFAIIQGGLDADLRATCLEEMTKRDVPGFAIGGLSGGESKSQFW
Sbjct: 181 WLDRCIAAHQRPDKQNLFAIIQGGLDADLRATCLEEMTKRDVPGFAIGGLSGGESKSQFW 240

Query: 241 RMVALSTSRLPKDKPRYLMGVGYATDLVVCVALGCDMFDCVFPTRTARFGSALVPTGNLQ 300
           RMVALSTSRLPKDKPRYLMGVGYATDLVVCVALGCDMFDCVFPTRTARFGSALVPTGNLQ
Sbjct: 241 RMVALSTSRLPKDKPRYLMGVGYATDLVVCVALGCDMFDCVFPTRTARFGSALVPTGNLQ 300

Query: 301 LRKKVFEKDFGPIDPECTCPTCQKHSRAFLHALLHSDNTAALHHLTVHNIAYQLQLMSAV 360
           LRKKVFEKDFGPIDPECTCPTCQKHSRAFLHALLHSDNTAALHHLTVHNIAYQLQLMSAV
Sbjct: 301 LRKKVFEKDFGPIDPECTCPTCQKHSRAFLHALLHSDNTAALHHLTVHNIAYQLQLMSAV 360

Query: 361 RTSIVEKRFPDFVRDFMGAMYGDPTLCPTWATDALASVGITLG 403
           RTSIVEKRFPDFVRDFMGAMYGDPTLCPTWATDALASVGITLG
Sbjct: 361 RTSIVEKRFPDFVRDFMGAMYGDPTLCPTWATDALASVGITLG 403


>gi|13375872 queuine tRNA-ribosyltransferase domain containing 1
           [Homo sapiens]
          Length = 415

 Score = 95.9 bits (237), Expect = 6e-20
 Identities = 82/328 (25%), Positives = 139/328 (42%), Gaps = 51/328 (15%)

Query: 85  LIQKANGLHGFMNWPHNLLTDSGGFQMVSLVSLSEVTEEGVRFRSPYDGNETLLSPEKSV 144
           L +   G+  F+  P +LL  S     VS      VT + V   S     E  +S  K +
Sbjct: 74  LTEYKEGVGKFIGMPESLLYCSL-HDPVSPCPAGYVTNKSVSVWSVAGRVEMTVS--KFM 130

Query: 145 QIQNALGSDIIMQLDDVVSS---TVTGPRVEEAMYRSIRWLDRCIAAHQRPD---KQNLF 198
            IQ AL  D    L D   S     +  RV +++ RS+ +LD C+   +  +   K  + 
Sbjct: 131 AIQKALQPDWFQCLSDGEVSCKEATSIKRVRKSVDRSLLFLDNCLRLQEESEVLQKSVII 190

Query: 199 AIIQGGLDADLRATCLEEMTKRDVPGFAIGGLSGGESKSQF-WRMVALSTSRLPKDKPRY 257
            +I+GG   + R     E  KR V GF + G  G  +  +   R+++  T+ LP+DKPR 
Sbjct: 191 GVIEGGDVMEERLRSARETAKRPVGGFLLDGFQGNPTTLEARLRLLSSVTAELPEDKPRL 250

Query: 258 LMGVGYATDLVVCVALGCDMFDCVFPTRTARFGSAL------------------------ 293
           + GV    +++ C+  G D+F+  FP +    G AL                        
Sbjct: 251 ISGVSRPDEVLECIERGVDLFESFFPYQVTERGCALTFSFDYQPNPEETLLQQNGTQEEI 310

Query: 294 -----------------VPTGNLQLRKKVFEKDFGPIDPECTCPTCQKHSRAFLHALLHS 336
                            + +  + L++K +++DF P+   C+C  C+ H+RA++H LL +
Sbjct: 311 KCMDQIKKIETTGCNQEITSFEINLKEKKYQEDFNPLVRGCSCYCCKNHTRAYIHHLLVT 370

Query: 337 DNTAALHHLTVHNIAYQLQLMSAVRTSI 364
           +   A   L +HN  +       +R ++
Sbjct: 371 NELLAGVLLMMHNFEHYFGFFHYIREAL 398


>gi|23110935 proteasome alpha 1 subunit isoform 1 [Homo sapiens]
          Length = 269

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 125 VRFRSPYDGNETLLSPEKSV-QIQNALGSDIIMQLDDVVSSTVTGPRVEEAMYRSIRWLD 183
           V+FR+ YD + T+ SP+  + QI+ A      M+     S+TV       A+  +++   
Sbjct: 6   VKFRNQYDNDVTVWSPQGRIHQIEYA------MEAVKQGSATVGLKSKTHAVLVALKRAQ 59

Query: 184 RCIAAHQRP--DKQNLFAIIQGGLDADLRATC 213
             +AAHQ+      N   I   GL AD R  C
Sbjct: 60  SELAAHQKKILHVDNHIGISIAGLTADARLLC 91


>gi|54792138 helicase with zinc finger domain [Homo sapiens]
          Length = 1942

 Score = 29.6 bits (65), Expect = 5.1
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 317  CTCPTCQKHSRAFLHALLHSDNTAALHHLTVHNIAYQLQLMSAVRTSIVEKRFPDFV 373
            C+   C+K    F+ AL H +++  LH +T   I  QL+ +   +T ++    P+F+
Sbjct: 1055 CSIGRCRKFWERFI-ALCHENSS--LHGITFEQIKAQLEALELKKTYVLNPLAPEFI 1108


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,384,031
Number of Sequences: 37866
Number of extensions: 669187
Number of successful extensions: 1267
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 5
length of query: 403
length of database: 18,247,518
effective HSP length: 105
effective length of query: 298
effective length of database: 14,271,588
effective search space: 4252933224
effective search space used: 4252933224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.