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Search of human proteins with 67089167
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|67089167 LETM1 domain containing 1 isoform 2 [Homo sapiens]
(304 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|67089167 LETM1 domain containing 1 isoform 2 [Homo sapiens] 627 e-180
gi|67089165 LETM1 domain containing 1 isoform 1 [Homo sapiens] 627 e-180
gi|6912482 leucine zipper-EF-hand containing transmembrane prote... 64 2e-10
gi|21389523 leucine zipper-EF-hand containing transmembrane prot... 51 1e-06
gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens] 33 0.31
gi|47078233 PCTAIRE protein kinase 3 isoform a [Homo sapiens] 31 1.6
gi|47078231 PCTAIRE protein kinase 3 isoform b [Homo sapiens] 31 1.6
gi|47078229 PCTAIRE protein kinase 3 isoform b [Homo sapiens] 31 1.6
gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens] 31 1.6
gi|55749644 UHRF1 (ICBP90) binding protein 1-like isoform a [Hom... 30 2.6
gi|148229509 G protein-coupled receptor 89A isoform 2 [Homo sapi... 29 5.9
gi|148228819 G protein-coupled receptor 89A isoform 1 [Homo sapi... 29 5.9
gi|7706704 G protein-coupled receptor 89B [Homo sapiens] 29 5.9
gi|148234741 G protein-coupled receptor 89C [Homo sapiens] 29 5.9
>gi|67089167 LETM1 domain containing 1 isoform 2 [Homo sapiens]
Length = 304
Score = 627 bits (1616), Expect = e-180
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MSYVVTKTKAINGKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIK 60
MSYVVTKTKAINGKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIK
Sbjct: 1 MSYVVTKTKAINGKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIK 60
Query: 61 FHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLLMYLFPRQLLIRHFWTPKQQ 120
FHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLLMYLFPRQLLIRHFWTPKQQ
Sbjct: 61 FHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLLMYLFPRQLLIRHFWTPKQQ 120
Query: 121 TDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGLRWRLTDLCTKIQRGTHPAIHDILALR 180
TDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGLRWRLTDLCTKIQRGTHPAIHDILALR
Sbjct: 121 TDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGLRWRLTDLCTKIQRGTHPAIHDILALR 180
Query: 181 ECFSNHPLGMNQLQALHVKALSRAMLLTSYLPPPLLRHRLKTHTTVIHQLDKALAKLGIG 240
ECFSNHPLGMNQLQALHVKALSRAMLLTSYLPPPLLRHRLKTHTTVIHQLDKALAKLGIG
Sbjct: 181 ECFSNHPLGMNQLQALHVKALSRAMLLTSYLPPPLLRHRLKTHTTVIHQLDKALAKLGIG 240
Query: 241 QLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYL 300
QLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYL
Sbjct: 241 QLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYL 300
Query: 301 GTRR 304
GTRR
Sbjct: 301 GTRR 304
>gi|67089165 LETM1 domain containing 1 isoform 1 [Homo sapiens]
Length = 360
Score = 627 bits (1616), Expect = e-180
Identities = 304/304 (100%), Positives = 304/304 (100%)
Query: 1 MSYVVTKTKAINGKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIK 60
MSYVVTKTKAINGKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIK
Sbjct: 57 MSYVVTKTKAINGKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKARRIKTNMWKHNIK 116
Query: 61 FHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLLMYLFPRQLLIRHFWTPKQQ 120
FHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLLMYLFPRQLLIRHFWTPKQQ
Sbjct: 117 FHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLLMYLFPRQLLIRHFWTPKQQ 176
Query: 121 TDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGLRWRLTDLCTKIQRGTHPAIHDILALR 180
TDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGLRWRLTDLCTKIQRGTHPAIHDILALR
Sbjct: 177 TDFLDIYHAFRKQSHPEIISYLEKVIPLISDAGLRWRLTDLCTKIQRGTHPAIHDILALR 236
Query: 181 ECFSNHPLGMNQLQALHVKALSRAMLLTSYLPPPLLRHRLKTHTTVIHQLDKALAKLGIG 240
ECFSNHPLGMNQLQALHVKALSRAMLLTSYLPPPLLRHRLKTHTTVIHQLDKALAKLGIG
Sbjct: 237 ECFSNHPLGMNQLQALHVKALSRAMLLTSYLPPPLLRHRLKTHTTVIHQLDKALAKLGIG 296
Query: 241 QLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYL 300
QLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYL
Sbjct: 297 QLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEWLQISCSLKEAELSLLLHNVVLLSTNYL 356
Query: 301 GTRR 304
GTRR
Sbjct: 357 GTRR 360
>gi|6912482 leucine zipper-EF-hand containing transmembrane protein
1 [Homo sapiens]
Length = 739
Score = 63.9 bits (154), Expect = 2e-10
Identities = 66/266 (24%), Positives = 118/266 (44%), Gaps = 22/266 (8%)
Query: 33 FMKGLQMLWADAKKARRIKTNMWKHNIKFHQLPYREMEHLRQFRQDVTKCLFLGIISIPP 92
+ G ++LW D K A R+ +W+ + H L RE + D+ + + + + P
Sbjct: 164 YYHGFRLLWIDTKIAARM---LWRI-LNGHSLTRRERRQFLRICADLFRLVPFLVFVVVP 219
Query: 93 FANYLVFLLMYLFPRQLLIRHFWTPKQQTDFLDIYHAFRKQSHP--EIISYLEKVIP--- 147
F +L+ + + LFP +L F T + + L +K+ E+ +L+ I
Sbjct: 220 FMEFLLPVAVKLFPN-MLPSTFETQSLKEERL------KKELRVKLELAKFLQDTIEEMA 272
Query: 148 LISDAGLRWRLTDLCTKIQR----GTHPAIHDILALRECFSNHPLGMNQLQALHVKALSR 203
L + A D Q+ G P+ +I+ + F + L ++ L + AL +
Sbjct: 273 LKNKAAKGSATKDFSVFFQKIRETGERPSNEEIMRFSKLFEDE-LTLDNLTRPQLVALCK 331
Query: 204 AMLLTSYLPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNSTHIGE 263
+ L S LR +L I DK +A+ G+ L +E+++AC RG+ + + E
Sbjct: 332 LLELQSIGTNNFLRFQLTMRLRSIKADDKLIAEEGVDSLNVKELQAACRARGMRALGVTE 391
Query: 264 DRCRTWLGEWLQISCSLKEAELSLLL 289
DR R L +WL + +E SLL+
Sbjct: 392 DRLRGQLKQWLDLHLH-QEIPTSLLI 416
>gi|21389523 leucine zipper-EF-hand containing transmembrane protein
2 [Homo sapiens]
Length = 396
Score = 51.2 bits (121), Expect = 1e-06
Identities = 32/117 (27%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 157 RLTDLCTKIQRGTHPAIHDILALRECFSNHPLGMNQLQALHVKALSRAMLLTSYLPPPLL 216
+L+ ++Q G P+ +I+ + F + L + L + AL + + L ++ LL
Sbjct: 159 QLSSYVKQVQTGHKPSTKEIVRFSKLFEDQ-LALEHLDRPQLVALCKLLELQTFGTNNLL 217
Query: 217 RHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNSTHIGEDRCRTWLGEW 273
R +L I D+ +AK G+ L+ E+++AC RG+ S + E++ R L EW
Sbjct: 218 RFQLLMKLKSIKADDEIIAKEGVTALSVSELQAACRARGMRSLGLTEEQLRQQLTEW 274
>gi|210147522 zinc finger, SWIM-type containing 6 [Homo sapiens]
Length = 1215
Score = 33.1 bits (74), Expect = 0.31
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 158 LTDLCTKIQRGTHPAIHDILALRECFSNHPLGMNQLQA---LHVKALSRAMLLTSYL 211
+T L + THPAI+D+ L C +H LG N+L A L VK++ A +L+ L
Sbjct: 1054 MTHLNLSYNQDTHPAINDV--LWACALSHSLGKNELAAIIPLVVKSVKCATVLSDIL 1108
>gi|47078233 PCTAIRE protein kinase 3 isoform a [Homo sapiens]
Length = 504
Score = 30.8 bits (68), Expect = 1.6
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 210 YLPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNS-THIGEDRCRT 268
YLP PL+ H + T IH L L +++A+ S Y R L H ED
Sbjct: 412 YLPQPLINHAPRLDTDGIHLLSSLLLYESKSRMSAEAALSHSYFRSLGERVHQLEDTASI 471
Query: 269 WLGEWLQISCSLKEAEL 285
+ SLKE +L
Sbjct: 472 F---------SLKEIQL 479
>gi|47078231 PCTAIRE protein kinase 3 isoform b [Homo sapiens]
Length = 474
Score = 30.8 bits (68), Expect = 1.6
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 210 YLPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNS-THIGEDRCRT 268
YLP PL+ H + T IH L L +++A+ S Y R L H ED
Sbjct: 382 YLPQPLINHAPRLDTDGIHLLSSLLLYESKSRMSAEAALSHSYFRSLGERVHQLEDTASI 441
Query: 269 WLGEWLQISCSLKEAEL 285
+ SLKE +L
Sbjct: 442 F---------SLKEIQL 449
>gi|47078229 PCTAIRE protein kinase 3 isoform b [Homo sapiens]
Length = 474
Score = 30.8 bits (68), Expect = 1.6
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 210 YLPPPLLRHRLKTHTTVIHQLDKALAKLGIGQLTAQEVKSACYLRGLNS-THIGEDRCRT 268
YLP PL+ H + T IH L L +++A+ S Y R L H ED
Sbjct: 382 YLPQPLINHAPRLDTDGIHLLSSLLLYESKSRMSAEAALSHSYFRSLGERVHQLEDTASI 441
Query: 269 WLGEWLQISCSLKEAEL 285
+ SLKE +L
Sbjct: 442 F---------SLKEIQL 449
>gi|149944451 zinc finger, SWIM domain containing 5 [Homo sapiens]
Length = 1185
Score = 30.8 bits (68), Expect = 1.6
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 169 THPAIHDILALRECFSNHPLGMNQLQA---LHVKALSRAMLLTSYL 211
THPAI+D+ L C +H LG N+L A L VK++ A +L+ L
Sbjct: 1035 THPAINDV--LWACALSHSLGKNELAALIPLVVKSVHCATVLSDIL 1078
>gi|55749644 UHRF1 (ICBP90) binding protein 1-like isoform a [Homo
sapiens]
Length = 1464
Score = 30.0 bits (66), Expect = 2.6
Identities = 16/70 (22%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 132 KQSHPEIISYLE-KVIPLISDAGLRWRLTDLCTKIQRGTHPAIHDILALRECFSNHPLGM 190
+++H +++S + K+ + + +R T++C ++ + T + +I +LR N P+G
Sbjct: 1183 QENHDDLMSVVVFKITGVNGEIDIRGEDTEICLQVNQVTPDQLGNI-SLRHYLCNRPVGS 1241
Query: 191 NQLQALHVKA 200
+Q +H K+
Sbjct: 1242 DQKAVIHSKS 1251
>gi|148229509 G protein-coupled receptor 89A isoform 2 [Homo
sapiens]
Length = 335
Score = 28.9 bits (63), Expect = 5.9
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 23/125 (18%)
Query: 8 TKAINGKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKAR---------------RIKT 52
+K GKY FLG +F Y ++ IFM + +++ K +
Sbjct: 158 SKTFKGKYFNFLG-YFFSIYCVWKIFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDV 216
Query: 53 NMWKHNIKFHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLL-----MYLFPR 107
W +I F + + +R +TK F IS +N +V LL MY
Sbjct: 217 KFWSQHISFILVGIIIVTSIRGLLITLTK--FFYAISSSKSSNVIVLLLAQIMGMYFVSS 274
Query: 108 QLLIR 112
LLIR
Sbjct: 275 VLLIR 279
>gi|148228819 G protein-coupled receptor 89A isoform 1 [Homo
sapiens]
Length = 455
Score = 28.9 bits (63), Expect = 5.9
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 23/125 (18%)
Query: 8 TKAINGKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKAR---------------RIKT 52
+K GKY FLG +F Y ++ IFM + +++ K +
Sbjct: 278 SKTFKGKYFNFLG-YFFSIYCVWKIFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDV 336
Query: 53 NMWKHNIKFHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLL-----MYLFPR 107
W +I F + + +R +TK F IS +N +V LL MY
Sbjct: 337 KFWSQHISFILVGIIIVTSIRGLLITLTK--FFYAISSSKSSNVIVLLLAQIMGMYFVSS 394
Query: 108 QLLIR 112
LLIR
Sbjct: 395 VLLIR 399
>gi|7706704 G protein-coupled receptor 89B [Homo sapiens]
Length = 455
Score = 28.9 bits (63), Expect = 5.9
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 23/125 (18%)
Query: 8 TKAINGKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKAR---------------RIKT 52
+K GKY FLG +F Y ++ IFM + +++ K +
Sbjct: 278 SKTFKGKYFNFLG-YFFSIYCVWKIFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDV 336
Query: 53 NMWKHNIKFHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLL-----MYLFPR 107
W +I F + + +R +TK F IS +N +V LL MY
Sbjct: 337 KFWSQHISFILVGIIIVTSIRGLLITLTK--FFYAISSSKSSNVIVLLLAQIMGMYFVSS 394
Query: 108 QLLIR 112
LLIR
Sbjct: 395 VLLIR 399
>gi|148234741 G protein-coupled receptor 89C [Homo sapiens]
Length = 320
Score = 28.9 bits (63), Expect = 5.9
Identities = 32/125 (25%), Positives = 48/125 (38%), Gaps = 23/125 (18%)
Query: 8 TKAINGKYHRFLGRHFPRFYVLYTIFMKGLQMLWADAKKAR---------------RIKT 52
+K GKY FLG +F Y ++ IFM + +++ K +
Sbjct: 143 SKTFKGKYFNFLG-YFFSIYCVWKIFMATINIVFDRVGKTDPVTRGIEITVNYLGIQFDV 201
Query: 53 NMWKHNIKFHQLPYREMEHLRQFRQDVTKCLFLGIISIPPFANYLVFLL-----MYLFPR 107
W +I F + + +R +TK F IS +N +V LL MY
Sbjct: 202 KFWSQHISFILVGIIIVTSIRGLLITLTK--FFYAISSSKSSNVIVLLLAQIMGMYFVSS 259
Query: 108 QLLIR 112
LLIR
Sbjct: 260 VLLIR 264
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.140 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,288,902
Number of Sequences: 37866
Number of extensions: 459793
Number of successful extensions: 1184
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 16
length of query: 304
length of database: 18,247,518
effective HSP length: 102
effective length of query: 202
effective length of database: 14,385,186
effective search space: 2905807572
effective search space used: 2905807572
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.