Search of human proteins with 63003928

Search of human proteins with 63003928

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|63003928 hypothetical protein LOC149297 [Homo sapiens]
         (261 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|63003928 hypothetical protein LOC149297 [Homo sapiens]             538   e-153
gi|118766332 hypothetical protein LOC286336 [Homo sapiens]            393   e-110
gi|21071016 epidermal growth factor receptor pathway substrate 8...    37   0.023
gi|21071018 epidermal growth factor receptor pathway substrate 8...    37   0.023
gi|21071014 epidermal growth factor receptor pathway substrate 8...    37   0.023
gi|16506297 hypothetical protein LOC92667 [Homo sapiens]               30   2.1  
gi|12707562 period 2 [Homo sapiens]                                    29   3.6  
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho...    28   6.2  

>gi|63003928 hypothetical protein LOC149297 [Homo sapiens]
          Length = 261

 Score =  538 bits (1386), Expect = e-153
 Identities = 261/261 (100%), Positives = 261/261 (100%)

Query: 1   MGCIQSITCKARIRRENIVVYDVCATIDQCPTRIEETSPIVLRYKTPYFKASARVVMPPI 60
           MGCIQSITCKARIRRENIVVYDVCATIDQCPTRIEETSPIVLRYKTPYFKASARVVMPPI
Sbjct: 1   MGCIQSITCKARIRRENIVVYDVCATIDQCPTRIEETSPIVLRYKTPYFKASARVVMPPI 60

Query: 61  PRHETWVVGWIQACNQMEFFNTYSDLGMSSWELPDLREGRVKAISDSDGVSYPWYGNTTE 120
           PRHETWVVGWIQACNQMEFFNTYSDLGMSSWELPDLREGRVKAISDSDGVSYPWYGNTTE
Sbjct: 61  PRHETWVVGWIQACNQMEFFNTYSDLGMSSWELPDLREGRVKAISDSDGVSYPWYGNTTE 120

Query: 121 TVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMNTTT 180
           TVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMNTTT
Sbjct: 121 TVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMNTTT 180

Query: 181 KEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEPIPPNALVKPNAN 240
           KEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEPIPPNALVKPNAN
Sbjct: 181 KEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEPIPPNALVKPNAN 240

Query: 241 DAQVLMWRPKRGPPLVVIPPK 261
           DAQVLMWRPKRGPPLVVIPPK
Sbjct: 241 DAQVLMWRPKRGPPLVVIPPK 261


>gi|118766332 hypothetical protein LOC286336 [Homo sapiens]
          Length = 283

 Score =  393 bits (1010), Expect = e-110
 Identities = 188/261 (72%), Positives = 222/261 (85%)

Query: 1   MGCIQSITCKARIRRENIVVYDVCATIDQCPTRIEETSPIVLRYKTPYFKASARVVMPPI 60
           MGCIQSI  KAR+ RE I V DV A+ID  PT I+E+S +VLRY+TP+F+ASA+VVMPPI
Sbjct: 21  MGCIQSIGGKARVFREGITVIDVKASIDPVPTSIDESSSVVLRYRTPHFRASAQVVMPPI 80

Query: 61  PRHETWVVGWIQACNQMEFFNTYSDLGMSSWELPDLREGRVKAISDSDGVSYPWYGNTTE 120
           P+ ETWVVGWIQAC+ MEF+N Y + GMSSWELPDL+EG+++AISDSDGV+YPWYGNTTE
Sbjct: 81  PKKETWVVGWIQACSHMEFYNQYGEQGMSSWELPDLQEGKIQAISDSDGVNYPWYGNTTE 140

Query: 121 TVTLVGPTNKISRFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMNTTT 180
           T T+VGPT + S+F +SMNDNFYPSVTWAVPVS+SNV  LT I RDQSFTTWLVA NT+T
Sbjct: 141 TCTIVGPTKRDSKFIISMNDNFYPSVTWAVPVSESNVAKLTNIYRDQSFTTWLVATNTST 200

Query: 181 KEKIILQTIKWRMRVDIEVDPLQLLGQRARLVGRTQQEQPRILSRMEPIPPNALVKPNAN 240
            + IILQT+ WRM++ IEV+P + LGQRARL     Q+QP+ILS+ EPIPP+ALVKPNAN
Sbjct: 201 NDMIILQTLHWRMQLSIEVNPNRPLGQRARLREPIAQDQPKILSKNEPIPPSALVKPNAN 260

Query: 241 DAQVLMWRPKRGPPLVVIPPK 261
           DAQVLMWRPK G PLVVIPPK
Sbjct: 261 DAQVLMWRPKYGQPLVVIPPK 281


>gi|21071016 epidermal growth factor receptor pathway substrate
           8-like protein 3 isoform b [Homo sapiens]
          Length = 593

 Score = 36.6 bits (83), Expect = 0.023
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 153 SDSNVPLLTRIKRDQSFTTWLVAMNTTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLV 212
           S S VP+L    R +  T WL A N +T     L ++     + I    LQ+L       
Sbjct: 518 SPSRVPMLRLSSRPEEVTDWLQAENFSTATVRTLGSLTGSQLLRIRPGELQML------- 570

Query: 213 GRTQQEQPRILSRMEPI 229
               QE PRILSR+E +
Sbjct: 571 --CPQEAPRILSRLEAV 585


>gi|21071018 epidermal growth factor receptor pathway substrate
           8-like protein 3 isoform a [Homo sapiens]
          Length = 594

 Score = 36.6 bits (83), Expect = 0.023
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 153 SDSNVPLLTRIKRDQSFTTWLVAMNTTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLV 212
           S S VP+L    R +  T WL A N +T     L ++     + I    LQ+L       
Sbjct: 519 SPSRVPMLRLSSRPEEVTDWLQAENFSTATVRTLGSLTGSQLLRIRPGELQML------- 571

Query: 213 GRTQQEQPRILSRMEPI 229
               QE PRILSR+E +
Sbjct: 572 --CPQEAPRILSRLEAV 586


>gi|21071014 epidermal growth factor receptor pathway substrate
           8-like protein 3 isoform c [Homo sapiens]
          Length = 563

 Score = 36.6 bits (83), Expect = 0.023
 Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 9/77 (11%)

Query: 153 SDSNVPLLTRIKRDQSFTTWLVAMNTTTKEKIILQTIKWRMRVDIEVDPLQLLGQRARLV 212
           S S VP+L    R +  T WL A N +T     L ++     + I    LQ+L       
Sbjct: 488 SPSRVPMLRLSSRPEEVTDWLQAENFSTATVRTLGSLTGSQLLRIRPGELQML------- 540

Query: 213 GRTQQEQPRILSRMEPI 229
               QE PRILSR+E +
Sbjct: 541 --CPQEAPRILSRLEAV 555


>gi|16506297 hypothetical protein LOC92667 [Homo sapiens]
          Length = 344

 Score = 30.0 bits (66), Expect = 2.1
 Identities = 30/135 (22%), Positives = 57/135 (42%), Gaps = 16/135 (11%)

Query: 73  ACNQMEFFNTYSDLGMSSWELPDLREGRVKAISDSDGVSYPWYGNTTETVTLVGPTNKIS 132
           +C + +  N Y ++    +         V+++  S GV+    G+  E   L GP +K  
Sbjct: 34  SCGRKKKVNPYEEVDQEKYS------NLVQSVLSSRGVAQT-PGSVEEDALLCGPVSKHK 86

Query: 133 --------RFSVSMNDNFYPSVTWAVPVSDSNVPLLTRIKRDQSFTTWLVAMNTTTKEKI 184
                   R   +    F P  +     SD +VPL   ++R+   +   V   T TK+++
Sbjct: 87  LPNQGEDRRVPQNWFPIFNPERSDKPNASDPSVPLKIPLQRNVIPSVTRVLQQTMTKQQV 146

Query: 185 ILQTIKWRMRVDIEV 199
            L   +W+ R+ +E+
Sbjct: 147 FLLE-RWKQRMILEL 160


>gi|12707562 period 2 [Homo sapiens]
          Length = 1255

 Score = 29.3 bits (64), Expect = 3.6
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 30  CPTRIEETSPIVLRYKTPYFKASARVVMPPIPRHETWVVGWIQACNQMEF 79
           CP  +   +P+   Y  P F A   V  PP P H ++ V  +    Q +F
Sbjct: 841 CPA-VPFPAPVPAAYSLPVFPAPGTVAAPPAPPHASFTVPAVPVDLQHQF 889


>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
           sapiens]
          Length = 406

 Score = 28.5 bits (62), Expect = 6.2
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 7/44 (15%)

Query: 224 SRMEPIPPN---ALVKPNANDAQVLMWRP----KRGPPLVVIPP 260
           SRM P+PP    A V P    A V  W P      GPP+  +PP
Sbjct: 280 SRMAPVPPGPRMAPVPPWPPMAPVPPWPPMAPVPTGPPMAPVPP 323


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.134    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,610,116
Number of Sequences: 37866
Number of extensions: 456813
Number of successful extensions: 965
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 8
length of query: 261
length of database: 18,247,518
effective HSP length: 100
effective length of query: 161
effective length of database: 14,460,918
effective search space: 2328207798
effective search space used: 2328207798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.