Search of human proteins with 62865610

Search of human proteins with 62865610

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|62865610 tripartite motif-containing 36 isoform 2 [Homo
sapiens]
         (60 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|62865610 tripartite motif-containing 36 isoform 2 [Homo sapiens]   129   4e-31
gi|62865606 tripartite motif-containing 36 isoform 1 [Homo sapiens]    45   1e-05
gi|62865608 tripartite motif-containing 36 isoform 3 [Homo sapiens]    45   2e-05

>gi|62865610 tripartite motif-containing 36 isoform 2 [Homo
          sapiens]
          Length = 60

 Score =  129 bits (325), Expect = 4e-31
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MSESGEMSEFGYIMELIAKGKMPDWRRGYRCRQGCGKTTELATATDFSQTGNKSGKHFKT 60
          MSESGEMSEFGYIMELIAKGKMPDWRRGYRCRQGCGKTTELATATDFSQTGNKSGKHFKT
Sbjct: 1  MSESGEMSEFGYIMELIAKGKMPDWRRGYRCRQGCGKTTELATATDFSQTGNKSGKHFKT 60


>gi|62865606 tripartite motif-containing 36 isoform 1 [Homo
          sapiens]
          Length = 728

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 21/22 (95%), Positives = 22/22 (100%)

Query: 1  MSESGEMSEFGYIMELIAKGKM 22
          MSESGEMSEFGYIMELIAKGK+
Sbjct: 1  MSESGEMSEFGYIMELIAKGKV 22


>gi|62865608 tripartite motif-containing 36 isoform 3 [Homo
          sapiens]
          Length = 61

 Score = 44.7 bits (104), Expect = 2e-05
 Identities = 21/21 (100%), Positives = 21/21 (100%)

Query: 1  MSESGEMSEFGYIMELIAKGK 21
          MSESGEMSEFGYIMELIAKGK
Sbjct: 1  MSESGEMSEFGYIMELIAKGK 21


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,223,348
Number of Sequences: 37866
Number of extensions: 62872
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 3
length of query: 60
length of database: 18,247,518
effective HSP length: 33
effective length of query: 27
effective length of database: 16,997,940
effective search space: 458944380
effective search space used: 458944380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.