Search of human proteins with 61175251

Search of human proteins with 61175251

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|61175251 hypothetical protein LOC388910 [Homo sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|61175251 hypothetical protein LOC388910 [Homo sapiens]             239   4e-64
gi|4507435 telethonin [Homo sapiens]                                   28   1.2  
gi|117938310 sine oculis binding protein homolog [Homo sapiens]        27   2.7  
gi|169206212 PREDICTED: hypothetical protein isoform 1 [Homo sap...    27   4.6  
gi|89037123 PREDICTED: hypothetical protein isoform 2 [Homo sapi...    27   4.6  
gi|89036792 PREDICTED: hypothetical protein isoform 2 [Homo sapi...    27   4.6  
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]                26   6.0  
gi|165932391 family with sequence similarity 69, member A [Homo ...    26   7.8  

>gi|61175251 hypothetical protein LOC388910 [Homo sapiens]
          Length = 113

 Score =  239 bits (609), Expect = 4e-64
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MSSTLREACDMGVLFKEENGWLHILLGIQSLNQRGTPCMMGCPTHFTDEEMEAREMKLAD 60
           MSSTLREACDMGVLFKEENGWLHILLGIQSLNQRGTPCMMGCPTHFTDEEMEAREMKLAD
Sbjct: 1   MSSTLREACDMGVLFKEENGWLHILLGIQSLNQRGTPCMMGCPTHFTDEEMEAREMKLAD 60

Query: 61  FLWNFLWTSGGTSCQQSRLDCFTKRMQPHLPAGVSSALRREAQNQMKTPAAAS 113
           FLWNFLWTSGGTSCQQSRLDCFTKRMQPHLPAGVSSALRREAQNQMKTPAAAS
Sbjct: 61  FLWNFLWTSGGTSCQQSRLDCFTKRMQPHLPAGVSSALRREAQNQMKTPAAAS 113


>gi|4507435 telethonin [Homo sapiens]
          Length = 167

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 36  TPCMMGCPTHFTDEEMEAREMKLADFLWNFLWTSGGTSC-QQSRLDCFTKRMQPHLPAGV 94
           TP  MG     T EE E   ++L + L   L T+ G  C  +  +   TK++ P +P   
Sbjct: 95  TPAKMGA----TKEEREDTPIQLQELL--ALETALGGQCVDRQEVAEITKQLPPVVPVSK 148

Query: 95  SSALRREAQNQMKTPA 110
             ALRR     M   A
Sbjct: 149 PGALRRSLSRSMSQEA 164


>gi|117938310 sine oculis binding protein homolog [Homo sapiens]
          Length = 873

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 76  QSRLDCFTKRMQPHLPAGVSSALRREAQNQ 105
           Q ++D F K  Q +LPAG+ S L    +N+
Sbjct: 257 QYKMDIFYKETQANLPAGLCSTLHPPMENK 286


>gi|169206212 PREDICTED: hypothetical protein isoform 1 [Homo
          sapiens]
          Length = 72

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 1  MSSTLREACDMGVLFKEENGWLHILLGIQSLNQRGT 36
          + S+ R A D       E GW+H+L G + +  RGT
Sbjct: 36 LRSSPRRAADQA-----EEGWIHMLRGDREMQLRGT 66


>gi|89037123 PREDICTED: hypothetical protein isoform 2 [Homo
          sapiens]
          Length = 72

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 1  MSSTLREACDMGVLFKEENGWLHILLGIQSLNQRGT 36
          + S+ R A D       E GW+H+L G + +  RGT
Sbjct: 36 LRSSPRRAADQA-----EEGWIHMLRGDREMQLRGT 66


>gi|89036792 PREDICTED: hypothetical protein isoform 2 [Homo
          sapiens]
          Length = 72

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)

Query: 1  MSSTLREACDMGVLFKEENGWLHILLGIQSLNQRGT 36
          + S+ R A D       E GW+H+L G + +  RGT
Sbjct: 36 LRSSPRRAADQA-----EEGWIHMLRGDREMQLRGT 66


>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
          Length = 1626

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 58 LADFLWNFLWTSGGTSCQQSRLDC 81
          +A  LW  L  SGG  CQ  R  C
Sbjct: 9  VAGLLWMLLLWSGGGGCQAQRAGC 32


>gi|165932391 family with sequence similarity 69, member A [Homo
           sapiens]
          Length = 428

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 11/46 (23%)

Query: 72  TSCQQSRLDCFTKRMQPHLP-----------AGVSSALRREAQNQM 106
           TSC QS + C ++ +QP+L             G  S +R E + Q+
Sbjct: 345 TSCDQSTMKCTSEVIQPNLAKACQLLKDYLLRGAPSEIREELEKQL 390


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.130    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,508,039
Number of Sequences: 37866
Number of extensions: 177475
Number of successful extensions: 266
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 8
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.