Search of human proteins with 58761518

Search of human proteins with 58761518

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|58761518 coiled-coil-helix-coiled-coil-helix domain
containing 7 isoform e [Homo sapiens]
         (56 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|58761518 coiled-coil-helix-coiled-coil-helix domain containin...   116   3e-27
gi|58761516 coiled-coil-helix-coiled-coil-helix domain containin...   116   3e-27
gi|58761512 coiled-coil-helix-coiled-coil-helix domain containin...   116   3e-27
gi|58761520 coiled-coil-helix-coiled-coil-helix domain containin...    42   1e-04
gi|58761514 coiled-coil-helix-coiled-coil-helix domain containin...    42   1e-04
gi|64464338 coiled-coil-helix-coiled-coil-helix domain containin...    42   1e-04

>gi|58761518 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform e [Homo sapiens]
          Length = 56

 Score =  116 bits (291), Expect = 3e-27
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS 56
          MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS
Sbjct: 1  MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS 56


>gi|58761516 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform c [Homo sapiens]
          Length = 68

 Score =  116 bits (291), Expect = 3e-27
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS 56
          MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS
Sbjct: 13 MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS 68


>gi|58761512 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform a [Homo sapiens]
          Length = 81

 Score =  116 bits (291), Expect = 3e-27
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 1  MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS 56
          MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS
Sbjct: 26 MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS 81


>gi|58761520 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform f [Homo sapiens]
          Length = 85

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)

Query: 1  MPSVTQRLRDPDINPCLS 18
          MPSVTQRLRDPDINPCLS
Sbjct: 1  MPSVTQRLRDPDINPCLS 18


>gi|58761514 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform b [Homo sapiens]
          Length = 110

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)

Query: 1  MPSVTQRLRDPDINPCLS 18
          MPSVTQRLRDPDINPCLS
Sbjct: 26 MPSVTQRLRDPDINPCLS 43


>gi|64464338 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform d [Homo sapiens]
          Length = 97

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)

Query: 1  MPSVTQRLRDPDINPCLS 18
          MPSVTQRLRDPDINPCLS
Sbjct: 13 MPSVTQRLRDPDINPCLS 30


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.139    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,171,353
Number of Sequences: 37866
Number of extensions: 59850
Number of successful extensions: 86
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80
Number of HSP's gapped (non-prelim): 6
length of query: 56
length of database: 18,247,518
effective HSP length: 29
effective length of query: 27
effective length of database: 17,149,404
effective search space: 463033908
effective search space used: 463033908
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.