Search of human proteins with 58761516

Search of human proteins with 58761516

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|58761516 coiled-coil-helix-coiled-coil-helix domain
containing 7 isoform c [Homo sapiens]
         (68 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|58761516 coiled-coil-helix-coiled-coil-helix domain containin...   140   2e-34
gi|58761512 coiled-coil-helix-coiled-coil-helix domain containin...   125   6e-30
gi|58761518 coiled-coil-helix-coiled-coil-helix domain containin...   116   3e-27
gi|64464338 coiled-coil-helix-coiled-coil-helix domain containin...    66   5e-12
gi|58761514 coiled-coil-helix-coiled-coil-helix domain containin...    51   2e-07
gi|58761520 coiled-coil-helix-coiled-coil-helix domain containin...    42   1e-04

>gi|58761516 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform c [Homo sapiens]
          Length = 68

 Score =  140 bits (354), Expect = 2e-34
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MHQTRTGKKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMT 60
          MHQTRTGKKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMT
Sbjct: 1  MHQTRTGKKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMT 60

Query: 61 GKGVPLTS 68
          GKGVPLTS
Sbjct: 61 GKGVPLTS 68


>gi|58761512 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform a [Homo sapiens]
          Length = 81

 Score =  125 bits (315), Expect = 6e-30
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 8  KKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLT 67
          KKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLT
Sbjct: 21 KKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLT 80

Query: 68 S 68
          S
Sbjct: 81 S 81


>gi|58761518 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform e [Homo sapiens]
          Length = 56

 Score =  116 bits (291), Expect = 3e-27
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 13 MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS 68
          MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS
Sbjct: 1  MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS 56


>gi|64464338 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform d [Homo sapiens]
          Length = 97

 Score = 66.2 bits (160), Expect = 5e-12
 Identities = 30/30 (100%), Positives = 30/30 (100%)

Query: 1  MHQTRTGKKTVRMPSVTQRLRDPDINPCLS 30
          MHQTRTGKKTVRMPSVTQRLRDPDINPCLS
Sbjct: 1  MHQTRTGKKTVRMPSVTQRLRDPDINPCLS 30


>gi|58761514 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform b [Homo sapiens]
          Length = 110

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 23/23 (100%), Positives = 23/23 (100%)

Query: 8  KKTVRMPSVTQRLRDPDINPCLS 30
          KKTVRMPSVTQRLRDPDINPCLS
Sbjct: 21 KKTVRMPSVTQRLRDPDINPCLS 43


>gi|58761520 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform f [Homo sapiens]
          Length = 85

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)

Query: 13 MPSVTQRLRDPDINPCLS 30
          MPSVTQRLRDPDINPCLS
Sbjct: 1  MPSVTQRLRDPDINPCLS 18


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,560,277
Number of Sequences: 37866
Number of extensions: 75765
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 6
length of query: 68
length of database: 18,247,518
effective HSP length: 41
effective length of query: 27
effective length of database: 16,695,012
effective search space: 450765324
effective search space used: 450765324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.