Search of human proteins with 58761512

Search of human proteins with 58761512

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|58761512 coiled-coil-helix-coiled-coil-helix domain
containing 7 isoform a [Homo sapiens]
         (81 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|58761512 coiled-coil-helix-coiled-coil-helix domain containin...   170   3e-43
gi|58761516 coiled-coil-helix-coiled-coil-helix domain containin...   125   6e-30
gi|58761518 coiled-coil-helix-coiled-coil-helix domain containin...   116   3e-27
gi|58761514 coiled-coil-helix-coiled-coil-helix domain containin...    96   8e-21
gi|64464338 coiled-coil-helix-coiled-coil-helix domain containin...    51   2e-07
gi|58761520 coiled-coil-helix-coiled-coil-helix domain containin...    42   1e-04
gi|148833506 obscurin, cytoskeletal calmodulin and titin-interac...    26   7.8  

>gi|58761512 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform a [Homo sapiens]
          Length = 81

 Score =  170 bits (430), Expect = 3e-43
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 1  MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNL 60
          MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNL
Sbjct: 1  MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNL 60

Query: 61 MLPPDVWMKITMTGKGVPLTS 81
          MLPPDVWMKITMTGKGVPLTS
Sbjct: 61 MLPPDVWMKITMTGKGVPLTS 81


>gi|58761516 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform c [Homo sapiens]
          Length = 68

 Score =  125 bits (315), Expect = 6e-30
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 21 KKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLT 80
          KKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLT
Sbjct: 8  KKTVRMPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLT 67

Query: 81 S 81
          S
Sbjct: 68 S 68


>gi|58761518 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform e [Homo sapiens]
          Length = 56

 Score =  116 bits (291), Expect = 3e-27
 Identities = 56/56 (100%), Positives = 56/56 (100%)

Query: 26 MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS 81
          MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS
Sbjct: 1  MPSVTQRLRDPDINPCLSILFYLLNDASLISVRNLMLPPDVWMKITMTGKGVPLTS 56


>gi|58761514 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform b [Homo sapiens]
          Length = 110

 Score = 95.5 bits (236), Expect = 8e-21
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLS 43
          MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLS
Sbjct: 1  MKCEETHAPNSNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLS 43


>gi|64464338 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform d [Homo sapiens]
          Length = 97

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 23/23 (100%), Positives = 23/23 (100%)

Query: 21 KKTVRMPSVTQRLRDPDINPCLS 43
          KKTVRMPSVTQRLRDPDINPCLS
Sbjct: 8  KKTVRMPSVTQRLRDPDINPCLS 30


>gi|58761520 coiled-coil-helix-coiled-coil-helix domain containing
          7 isoform f [Homo sapiens]
          Length = 85

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 18/18 (100%), Positives = 18/18 (100%)

Query: 26 MPSVTQRLRDPDINPCLS 43
          MPSVTQRLRDPDINPCLS
Sbjct: 1  MPSVTQRLRDPDINPCLS 18


>gi|148833506 obscurin, cytoskeletal calmodulin and titin-interacting
            RhoGEF isoform b [Homo sapiens]
          Length = 7968

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 1    MKCEETHAPN----------SNWVYVMLPSKKTVRMPSVTQRLRDPDINPCLSILFYLLN 50
            M  EE H  N          S W   ++  K  + M S+ + LR P  +P L +  +L  
Sbjct: 6725 MPAEEAHFINTKQLKFLLARSRWQRSLMSYKSILVMRSIPELLRGPPDSPSLGVARHLCR 6784

Query: 51   D 51
            D
Sbjct: 6785 D 6785


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,364,285
Number of Sequences: 37866
Number of extensions: 112275
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 7
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.