Search of human proteins with 58331207

Search of human proteins with 58331207

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|58331207 retinoid X receptor, gamma isoform b [Homo sapiens]
         (33 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|58331207 retinoid X receptor, gamma isoform b [Homo sapiens]        73   5e-14
gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]         44   3e-05

>gi|58331207 retinoid X receptor, gamma isoform b [Homo sapiens]
          Length = 33

 Score = 72.8 bits (177), Expect = 5e-14
 Identities = 33/33 (100%), Positives = 33/33 (100%)

Query: 1  MYGNYSHFMKFPAGYGGCSSPALQLLLSTSLGL 33
          MYGNYSHFMKFPAGYGGCSSPALQLLLSTSLGL
Sbjct: 1  MYGNYSHFMKFPAGYGGCSSPALQLLLSTSLGL 33


>gi|5902068 retinoid X receptor, gamma isoform a [Homo sapiens]
          Length = 463

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 20/33 (60%), Positives = 21/33 (63%)

Query: 1  MYGNYSHFMKFPAGYGGCSSPALQLLLSTSLGL 33
          MYGNYSHFMKFPAGYGG         +S S  L
Sbjct: 1  MYGNYSHFMKFPAGYGGSPGHTGSTSMSPSAAL 33


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,387,368
Number of Sequences: 37866
Number of extensions: 27229
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81
Number of HSP's gapped (non-prelim): 2
length of query: 33
length of database: 18,247,518
effective HSP length: 8
effective length of query: 25
effective length of database: 17,944,590
effective search space: 448614750
effective search space used: 448614750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.