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Search of human proteins with 5803215
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|5803215 uroplakin 2 [Homo sapiens]
(184 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|5803215 uroplakin 2 [Homo sapiens] 350 5e-97
gi|5902152 uroplakin 3A precursor [Homo sapiens] 32 0.31
gi|89363047 death-associated protein kinase 1 [Homo sapiens] 29 2.6
gi|239756522 PREDICTED: hypothetical protein [Homo sapiens] 28 3.4
gi|239751030 PREDICTED: hypothetical protein XP_002347679 [Homo ... 28 3.4
gi|239745460 PREDICTED: hypothetical protein XP_002343497 [Homo ... 28 3.4
gi|113417486 PREDICTED: hypothetical protein [Homo sapiens] 28 4.5
gi|239513940 PREDICTED: hypothetical protein [Homo sapiens] 28 4.5
gi|169217399 PREDICTED: hypothetical protein [Homo sapiens] 28 5.8
gi|89061367 PREDICTED: hypothetical protein [Homo sapiens] 28 5.8
gi|239747027 PREDICTED: hypothetical protein XP_002343909 [Homo ... 28 5.8
gi|239754269 PREDICTED: hypothetical protein [Homo sapiens] 27 9.9
gi|169168665 PREDICTED: hypothetical protein [Homo sapiens] 27 9.9
gi|239740898 PREDICTED: hypothetical protein [Homo sapiens] 27 9.9
gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo ... 27 9.9
gi|239740674 PREDICTED: hypothetical protein [Homo sapiens] 27 9.9
gi|239740645 PREDICTED: hypothetical protein [Homo sapiens] 27 9.9
gi|33149306 uroplakin 3B isoform b [Homo sapiens] 27 9.9
>gi|5803215 uroplakin 2 [Homo sapiens]
Length = 184
Score = 350 bits (897), Expect = 5e-97
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MAPLLPIRTLPLILILLALLSPGAADFNISSLSGLLSPALTESLLVALPPCHLTGGNATL 60
MAPLLPIRTLPLILILLALLSPGAADFNISSLSGLLSPALTESLLVALPPCHLTGGNATL
Sbjct: 1 MAPLLPIRTLPLILILLALLSPGAADFNISSLSGLLSPALTESLLVALPPCHLTGGNATL 60
Query: 61 MVRRANDSKVVTSSFVVPPCRGRRELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYL 120
MVRRANDSKVVTSSFVVPPCRGRRELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYL
Sbjct: 61 MVRRANDSKVVTSSFVVPPCRGRRELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYL 120
Query: 121 VKKGTATESSREIPMSTLPRRNMESIGLGMARTGGMVVITVLLSVAMFLLVLGFIIALAL 180
VKKGTATESSREIPMSTLPRRNMESIGLGMARTGGMVVITVLLSVAMFLLVLGFIIALAL
Sbjct: 121 VKKGTATESSREIPMSTLPRRNMESIGLGMARTGGMVVITVLLSVAMFLLVLGFIIALAL 180
Query: 181 GSRK 184
GSRK
Sbjct: 181 GSRK 184
>gi|5902152 uroplakin 3A precursor [Homo sapiens]
Length = 287
Score = 32.0 bits (71), Expect = 0.31
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 152 RTGGMVVITVLLSVAMFLLVLGFIIALAL 180
R+GGM+VIT +L F L++GF A+AL
Sbjct: 204 RSGGMIVITSILGSLPFFLLVGFAGAIAL 232
>gi|89363047 death-associated protein kinase 1 [Homo sapiens]
Length = 1430
Score = 28.9 bits (63), Expect = 2.6
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 3 PLLPIRTLPLILILLALLSPGAADFNISSLSGLLSPALTESLL-VALPPCH 52
P P+ + P + + + L PG + ++ S S + P LT+ +L V + P H
Sbjct: 732 PPSPLASKPTVSVSINNLYPGCENVSVRSRSMMFEPGLTKGMLEVFVAPTH 782
>gi|239756522 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 20 LSPGAADFNISSLSGLLSPALTESLLVALPPCH 52
L PG ++++L L+ PAL E L +L CH
Sbjct: 135 LLPGVVQDHLAALQTLVPPALVEELSGSLQQCH 167
>gi|239751030 PREDICTED: hypothetical protein XP_002347679 [Homo
sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 20 LSPGAADFNISSLSGLLSPALTESLLVALPPCH 52
L PG ++++L L+ PAL E L +L CH
Sbjct: 135 LLPGVVQDHLAALQTLVPPALVEELSGSLQQCH 167
>gi|239745460 PREDICTED: hypothetical protein XP_002343497 [Homo
sapiens]
Length = 194
Score = 28.5 bits (62), Expect = 3.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 20 LSPGAADFNISSLSGLLSPALTESLLVALPPCH 52
L PG ++++L L+ PAL E L +L CH
Sbjct: 135 LLPGVVQDHLAALQTLVPPALVEELSGSLQQCH 167
>gi|113417486 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1612
Score = 28.1 bits (61), Expect = 4.5
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 27 FNISSLSGLLSPALTESLLVALPPCHLTGGNATLMVRRANDSKVVTSSFVVPPCR--GRR 84
F I S S + S A E +L T + T A + V +++FV+ +
Sbjct: 1237 FIIGSESTIASTASLEPTATSLTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQ 1296
Query: 85 ELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYLVKKGTATESSREIPMSTLPRRNME 144
+ + SG T TRL+A + PG F TA+ +S +P L +
Sbjct: 1297 PITNTPMSGTRTTGTRLTASSSVTMAPGMDF---------TASAASHTVPGIVLNTSGLG 1347
Query: 145 SIGLGMART 153
+ +G + T
Sbjct: 1348 TSTMGASST 1356
>gi|239513940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 28.1 bits (61), Expect = 4.5
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 27 FNISSLSGLLSPALTESLLVALPPCHLTGGNATLMVRRANDSKVVTSSFVVPPCR--GRR 84
F I S S + S A E +L T + T A + V +++FV+ +
Sbjct: 1237 FIIGSESTIASTASLEPTATSLTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQ 1296
Query: 85 ELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYLVKKGTATESSREIPMSTLPRRNME 144
+ + SG T TRL+A + PG F TA+ +S +P L +
Sbjct: 1297 PITNTPMSGTRTTGTRLTASSSVTMAPGMDF---------TASAASHTVPGIVLNTSGLG 1347
Query: 145 SIGLGMART 153
+ +G + T
Sbjct: 1348 TSTMGASST 1356
>gi|169217399 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 27.7 bits (60), Expect = 5.8
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 3 PLLPIRTLPLILILLALLS-PGAADFNISSLSGLLSPALTESLLVALPPCH 52
PL +R L L+ I L P + S+ SGLLS ES + PPCH
Sbjct: 81 PLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQESGIPFCPPCH 131
>gi|89061367 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 27.7 bits (60), Expect = 5.8
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 3 PLLPIRTLPLILILLALLS-PGAADFNISSLSGLLSPALTESLLVALPPCH 52
PL +R L L+ I L P + S+ SGLLS ES + PPCH
Sbjct: 81 PLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQESGIPFCPPCH 131
>gi|239747027 PREDICTED: hypothetical protein XP_002343909 [Homo
sapiens]
Length = 160
Score = 27.7 bits (60), Expect = 5.8
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 3 PLLPIRTLPLILILLALLS-PGAADFNISSLSGLLSPALTESLLVALPPCH 52
PL +R L L+ I L P + S+ SGLLS ES + PPCH
Sbjct: 81 PLHRLRALWLVSIPPTLQGFPRLMNSQASTTSGLLSLCSQESGIPFCPPCH 131
>gi|239754269 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 26.9 bits (58), Expect = 9.9
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 27 FNISSLSGLLSPALTESLLVALPPCHLTGGNATLMVRRANDSKVVTSSFVVPPCR--GRR 84
F I S + + S A E +L T + T A + V +++FV+ +
Sbjct: 1247 FIIGSETTIASTASLEPTATSLTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQ 1306
Query: 85 ELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYLVKKGTATESSREIPMSTLPRRNME 144
+ + SG T TRL+A + PG F TA+ +S +P L +
Sbjct: 1307 PITNTPMSGTRTTGTRLTASSSVTMAPGMDF---------TASAASHTVPGIVLNTSGLG 1357
Query: 145 SIGLGMART 153
+ +G + T
Sbjct: 1358 TSTMGASST 1366
>gi|169168665 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1521
Score = 26.9 bits (58), Expect = 9.9
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 27 FNISSLSGLLSPALTESLLVALPPCHLTGGNATLMVRRANDSKVVTSSFVVPPCR--GRR 84
F I S + + S A E +L T + T A + V +++FV+ +
Sbjct: 1237 FIIGSETTIASTASLEPTATSLTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQ 1296
Query: 85 ELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYLVKKGTATESSREIPMSTLPRRNME 144
+ + SG T TRL+A + PG F TA+ +S +P L +
Sbjct: 1297 PITNTPMSGTRTTGTRLTASSSVTMAPGMDF---------TASAASHTVPGIVLNTSGLG 1347
Query: 145 SIGLGMART 153
+ +G + T
Sbjct: 1348 TSTMGASST 1356
>gi|239740898 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1542
Score = 26.9 bits (58), Expect = 9.9
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 27 FNISSLSGLLSPALTESLLVALPPCHLTGGNATLMVRRANDSKVVTSSFVVPPCR--GRR 84
F I S + + S A E +L T + T A + V +++FV+ +
Sbjct: 1258 FIIGSETTIASTASLEPTATSLTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQ 1317
Query: 85 ELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYLVKKGTATESSREIPMSTLPRRNME 144
+ + SG T TRL+A + PG F TA+ +S +P L +
Sbjct: 1318 PITNTPMSGTRTTGTRLTASSSVTMAPGMDF---------TASAASHTVPGIVLNTSGLG 1368
Query: 145 SIGLGMART 153
+ +G + T
Sbjct: 1369 TSTMGASST 1377
>gi|239740827 PREDICTED: hypothetical protein XP_002344067 [Homo
sapiens]
Length = 1521
Score = 26.9 bits (58), Expect = 9.9
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 27 FNISSLSGLLSPALTESLLVALPPCHLTGGNATLMVRRANDSKVVTSSFVVPPCR--GRR 84
F I S + + S A E +L T + T A + V +++FV+ +
Sbjct: 1237 FIIGSETTIASTASLEPTATSLTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQ 1296
Query: 85 ELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYLVKKGTATESSREIPMSTLPRRNME 144
+ + SG T TRL+A + PG F TA+ +S +P L +
Sbjct: 1297 PITNTPMSGTRTTGTRLTASSSVTMAPGMDF---------TASAASHTVPGIVLNTSGLG 1347
Query: 145 SIGLGMART 153
+ +G + T
Sbjct: 1348 TSTMGASST 1356
>gi|239740674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 26.9 bits (58), Expect = 9.9
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 27 FNISSLSGLLSPALTESLLVALPPCHLTGGNATLMVRRANDSKVVTSSFVVPPCR--GRR 84
F I S + + S A E +L T + T A + V +++FV+ +
Sbjct: 1247 FIIGSETTIASTASLEPTATSLTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQ 1306
Query: 85 ELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYLVKKGTATESSREIPMSTLPRRNME 144
+ + SG T TRL+A + PG F TA+ +S +P L +
Sbjct: 1307 PITNTPMSGTRTTGTRLTASSSVTMAPGMDF---------TASAASHTVPGIVLNTSGLG 1357
Query: 145 SIGLGMART 153
+ +G + T
Sbjct: 1358 TSTMGASST 1366
>gi|239740645 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1531
Score = 26.9 bits (58), Expect = 9.9
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 27 FNISSLSGLLSPALTESLLVALPPCHLTGGNATLMVRRANDSKVVTSSFVVPPCR--GRR 84
F I S + + S A E +L T + T A + V +++FV+ +
Sbjct: 1247 FIIGSETTIASTASLEPTATSLTGSETTTVSITASGATAASTTVSSTTFVLTKATDVSIQ 1306
Query: 85 ELVSVVDSGAGFTVTRLSAYQVTNLVPGTKFYISYLVKKGTATESSREIPMSTLPRRNME 144
+ + SG T TRL+A + PG F TA+ +S +P L +
Sbjct: 1307 PITNTPMSGTRTTGTRLTASSSVTMAPGMDF---------TASAASHTVPGIVLNTSGLG 1357
Query: 145 SIGLGMART 153
+ +G + T
Sbjct: 1358 TSTMGASST 1366
>gi|33149306 uroplakin 3B isoform b [Homo sapiens]
Length = 276
Score = 26.9 bits (58), Expect = 9.9
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 152 RTGGMVVITVLLSVAMFLLVLGFIIA 177
R+G M+VIT +LS LL+L F+ A
Sbjct: 194 RSGSMIVITSILSSLAGLLLLAFLAA 219
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.138 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,109,417
Number of Sequences: 37866
Number of extensions: 235428
Number of successful extensions: 676
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 669
Number of HSP's gapped (non-prelim): 18
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.