Search of human proteins with 5454090

Search of human proteins with 5454090

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|5454090 signal sequence receptor, delta [Homo sapiens]
         (173 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|5454090 signal sequence receptor, delta [Homo sapiens]             344   2e-95
gi|14591902 RecQ protein-like [Homo sapiens]                           28   5.2  
gi|14591904 RecQ protein-like [Homo sapiens]                           28   5.2  
gi|41393599 coproporphyrinogen oxidase [Homo sapiens]                  27   6.7  

>gi|5454090 signal sequence receptor, delta [Homo sapiens]
          Length = 173

 Score =  344 bits (883), Expect = 2e-95
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR 60
           MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR
Sbjct: 1   MAAMASLGALALLLLSSLSRCSAEACLEPQITPSYYTTSDAVISTETVFIVEISLTCKNR 60

Query: 61  VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR 120
           VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR
Sbjct: 61  VQNMALYADVGGKQFPVTRGQDVGRYQVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQR 120

Query: 121 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173
           NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA
Sbjct: 121 NNEDISIIPPLFTVSVDHRGTWNGPWVSTEVLAAAIGLVIYYLAFSAKSHIQA 173


>gi|14591902 RecQ protein-like [Homo sapiens]
          Length = 649

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 87  QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVD 137
           QV+ SL +   HAG Y      E+  ++ RK   N   + +    F + +D
Sbjct: 329 QVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGID 379


>gi|14591904 RecQ protein-like [Homo sapiens]
          Length = 649

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 87  QVSWSLDHKSAHAGTYEVRFFDEESYSLLRKAQRNNEDISIIPPLFTVSVD 137
           QV+ SL +   HAG Y      E+  ++ RK   N   + +    F + +D
Sbjct: 329 QVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGID 379


>gi|41393599 coproporphyrinogen oxidase [Homo sapiens]
          Length = 454

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 2/29 (6%)

Query: 144 GPWVSTEVLAAAIGLVIYYLAFSAKSHIQ 172
           GPWV T + AA  GLV   LA +A  H+Q
Sbjct: 71  GPWVGTGLAAALAGLV--GLATAAFGHVQ 97


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.131    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,832,522
Number of Sequences: 37866
Number of extensions: 221173
Number of successful extensions: 457
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 4
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.