Search of human proteins with 51479132

Search of human proteins with 51479132

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|51479132 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F2 isoform 2c [Homo sapiens]
         (55 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|51479132 ATP synthase, H+ transporting, mitochondrial F0 comp...   117   2e-27
gi|4757812 ATP synthase, H+ transporting, mitochondrial F0 compl...    99   9e-22
gi|85794908 ATP synthase, H+ transporting, mitochondrial F0 comp...    96   5e-21
gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting...    91   3e-19
gi|51479129 ATP synthase, H+ transporting, mitochondrial F0 comp...    77   2e-15
gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting...    47   2e-06
gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,...    47   2e-06
gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,...    47   2e-06
gi|27477095 nuclear receptor binding SET domain protein 1 isofor...    26   7.7  
gi|19923586 nuclear receptor binding SET domain protein 1 isofor...    26   7.7  

>gi|51479132 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2c [Homo sapiens]
          Length = 55

 Score =  117 bits (293), Expect = 2e-27
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 55
          MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH
Sbjct: 1  MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 55


>gi|4757812 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2a [Homo sapiens]
          Length = 94

 Score = 98.6 bits (244), Expect = 9e-22
 Identities = 47/50 (94%), Positives = 48/50 (96%)

Query: 1  MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHER 50
          MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQR + R
Sbjct: 1  MASVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYR 50


>gi|85794908 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2d [Homo sapiens]
          Length = 49

 Score = 96.3 bits (238), Expect = 5e-21
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 55
          VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH
Sbjct: 5  VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 49


>gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 79

 Score = 90.5 bits (223), Expect = 3e-19
 Identities = 43/45 (95%), Positives = 43/45 (95%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHERLRKYH 55
          VPVKDKKLLEVKLGELPSWILM DFSPSGIFGAFQREHE LRKYH
Sbjct: 35 VPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQREHEWLRKYH 79


>gi|51479129 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2b [Homo sapiens]
          Length = 88

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 37/40 (92%), Positives = 38/40 (95%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHER 50
          VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQR + R
Sbjct: 5  VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYR 44


>gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 21/24 (87%), Positives = 23/24 (95%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRD 34
          +PVKDKK LEVKLGELPSWILM+D
Sbjct: 5  IPVKDKKHLEVKLGELPSWILMQD 28


>gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 21/24 (87%), Positives = 23/24 (95%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRD 34
          +PVKDKK LEVKLGELPSWILM+D
Sbjct: 5  IPVKDKKHLEVKLGELPSWILMQD 28


>gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 21/24 (87%), Positives = 23/24 (95%)

Query: 11 VPVKDKKLLEVKLGELPSWILMRD 34
          +PVKDKK LEVKLGELPSWILM+D
Sbjct: 5  IPVKDKKHLEVKLGELPSWILMQD 28


>gi|27477095 nuclear receptor binding SET domain protein 1 isoform a
            [Homo sapiens]
          Length = 2427

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 3    SVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIF 41
            S+G+ PA +P ++KKL+     E   W L +  S +G++
Sbjct: 2333 SLGKAPASLPTEEKKLVTT---EQSPWALGKASSRAGLW 2368


>gi|19923586 nuclear receptor binding SET domain protein 1 isoform b
            [Homo sapiens]
          Length = 2696

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)

Query: 3    SVGECPAPVPVKDKKLLEVKLGELPSWILMRDFSPSGIF 41
            S+G+ PA +P ++KKL+     E   W L +  S +G++
Sbjct: 2602 SLGKAPASLPTEEKKLVTT---EQSPWALGKASSRAGLW 2637


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.140    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,389,325
Number of Sequences: 37866
Number of extensions: 81091
Number of successful extensions: 157
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 12
length of query: 55
length of database: 18,247,518
effective HSP length: 29
effective length of query: 26
effective length of database: 17,149,404
effective search space: 445884504
effective search space used: 445884504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.