Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ATP5J2 Sequence: fasta or formatted (88aa) NCBI GI: 51479129
Description:

ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F2 isoform 2b

Referenced in:

Oxidative Phosphorylation

Other entries for this name:
alt prot [94aa] ATP synthase, H+ transporting, mitochondrial F0 complex, subunit ...
alt prot [55aa] ATP synthase, H+ transporting, mitochondrial F0 complex, subunit ...
alt prot [49aa] ATP synthase, H+ transporting, mitochondrial F0 complex, subunit ...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          3           1
 C cysteine            1.1          1           1
 D aspartate           2.3          2           1
 E glutamate           3.4          3           1
 F phenylalanine       5.7          5           1
 G glycine             6.8          6           1
 H histidine           3.4          3           1
 I isoleucine          5.7          5           1
 K lysine             11.4         10           2
 L leucine            10.2          9           2
 M methionine          3.4          3           1
 N asparagine          2.3          2           1
 P proline             3.4          3           1
 Q glutamine           1.1          1           1
 R arginine            5.7          5           1
 S serine             10.2          9           1
 T threonine           1.1          1           1
 V valine              8.0          7           2
 W tryptophan          1.1          1           1
 Y tyrosine           10.2          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ATP synthase, H+ transporting, mitochondrial F0 comp... 
ATP5J2                0.962   ATP synthase, H+ transporting, mitochondrial F0 compl...
LOC645225             0.639   PREDICTED: similar to ATP synthase, H+ transporting...
LOC645225             0.639   PREDICTED: similar to ATP synthase, H+ transporting,...
LOC645225             0.639   PREDICTED: similar to ATP synthase, H+ transporting,...
ATP5J2                0.373   ATP synthase, H+ transporting, mitochondrial F0 comp...
LOC100293489          0.342   PREDICTED: similar to ATP synthase, H+ transporting...
ATP5J2                0.329   ATP synthase, H+ transporting, mitochondrial F0 comp...
C17orf80              0.101   lung cancer-related protein 8 isoform c 
C17orf80              0.076   lung cancer-related protein 8 isoform a 
SLC7A9                0.019   solute carrier family 7, member 9 
SLC7A9                0.019   solute carrier family 7, member 9 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press