Search of human proteins with 51479129

Search of human proteins with 51479129

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|51479129 ATP synthase, H+ transporting, mitochondrial F0
complex, subunit F2 isoform 2b [Homo sapiens]
         (88 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|51479129 ATP synthase, H+ transporting, mitochondrial F0 comp...   183   2e-47
gi|4757812 ATP synthase, H+ transporting, mitochondrial F0 compl...   177   2e-45
gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting...   126   4e-30
gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,...   126   4e-30
gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,...   126   4e-30
gi|85794908 ATP synthase, H+ transporting, mitochondrial F0 comp...    84   2e-17
gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting...    79   8e-16
gi|51479132 ATP synthase, H+ transporting, mitochondrial F0 comp...    77   2e-15
gi|154800469 lung cancer-related protein 8 isoform c [Homo sapiens]    41   2e-04
gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens]     37   0.004
gi|187423910 solute carrier family 7, member 9 [Homo sapiens]          28   1.5  
gi|7657591 solute carrier family 7, member 9 [Homo sapiens]            28   1.5  

>gi|51479129 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2b [Homo sapiens]
          Length = 88

 Score =  183 bits (465), Expect = 2e-47
 Identities = 88/88 (100%), Positives = 88/88 (100%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGI 60
          MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGI
Sbjct: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGI 60

Query: 61 TMVLACYVLFSYSFSYKHLKHERLRKYH 88
          TMVLACYVLFSYSFSYKHLKHERLRKYH
Sbjct: 61 TMVLACYVLFSYSFSYKHLKHERLRKYH 88


>gi|4757812 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2a [Homo sapiens]
          Length = 94

 Score =  177 bits (448), Expect = 2e-45
 Identities = 84/84 (100%), Positives = 84/84 (100%)

Query: 5  VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVL 64
          VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVL
Sbjct: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITMVL 70

Query: 65 ACYVLFSYSFSYKHLKHERLRKYH 88
          ACYVLFSYSFSYKHLKHERLRKYH
Sbjct: 71 ACYVLFSYSFSYKHLKHERLRKYH 94


>gi|169179961 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score =  126 bits (316), Expect = 4e-30
 Identities = 64/88 (72%), Positives = 70/88 (79%), Gaps = 3/88 (3%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGI 60
          M SV+PVKDKK LEVKLGELPSWILM+D     I    QRGYY YYNKYINVKKGSISG+
Sbjct: 1  MTSVIPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYWYYNKYINVKKGSISGL 57

Query: 61 TMVLACYVLFSYSFSYKHLKHERLRKYH 88
          TMVLA Y+LF Y  SYK LKH+RL +YH
Sbjct: 58 TMVLAGYMLFRYCLSYKELKHKRLCRYH 85


>gi|89030419 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score =  126 bits (316), Expect = 4e-30
 Identities = 64/88 (72%), Positives = 70/88 (79%), Gaps = 3/88 (3%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGI 60
          M SV+PVKDKK LEVKLGELPSWILM+D     I    QRGYY YYNKYINVKKGSISG+
Sbjct: 1  MTSVIPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYWYYNKYINVKKGSISGL 57

Query: 61 TMVLACYVLFSYSFSYKHLKHERLRKYH 88
          TMVLA Y+LF Y  SYK LKH+RL +YH
Sbjct: 58 TMVLAGYMLFRYCLSYKELKHKRLCRYH 85


>gi|89029850 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 85

 Score =  126 bits (316), Expect = 4e-30
 Identities = 64/88 (72%), Positives = 70/88 (79%), Gaps = 3/88 (3%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGI 60
          M SV+PVKDKK LEVKLGELPSWILM+D     I    QRGYY YYNKYINVKKGSISG+
Sbjct: 1  MTSVIPVKDKKHLEVKLGELPSWILMQD---RVIAAGIQRGYYWYYNKYINVKKGSISGL 57

Query: 61 TMVLACYVLFSYSFSYKHLKHERLRKYH 88
          TMVLA Y+LF Y  SYK LKH+RL +YH
Sbjct: 58 TMVLAGYMLFRYCLSYKELKHKRLCRYH 85


>gi|85794908 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2d [Homo sapiens]
          Length = 49

 Score = 84.0 bits (206), Expect = 2e-17
 Identities = 41/44 (93%), Positives = 42/44 (95%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYR 44
          MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQR + R
Sbjct: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHER 44


>gi|239754433 PREDICTED: similar to ATP synthase, H+ transporting,
          mitochondrial F0 complex, subunit F2 [Homo sapiens]
          Length = 79

 Score = 79.0 bits (193), Expect = 8e-16
 Identities = 40/49 (81%), Positives = 43/49 (87%), Gaps = 1/49 (2%)

Query: 1  MASVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKY 49
          +ASVVPVKDKKLLEVKLGELPSWILM DFSPSGIFGAFQR  + +  KY
Sbjct: 31 IASVVPVKDKKLLEVKLGELPSWILMGDFSPSGIFGAFQR-EHEWLRKY 78


>gi|51479132 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F2 isoform 2c [Homo sapiens]
          Length = 55

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 37/40 (92%), Positives = 38/40 (95%)

Query: 5  VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYR 44
          VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQR + R
Sbjct: 11 VPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQREHER 50


>gi|154800469 lung cancer-related protein 8 isoform c [Homo sapiens]
          Length = 583

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)

Query: 3   SVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITM 62
           S V + ++    ++  E P+ +   +FS   + GA Q+G+ R       ++K    GITM
Sbjct: 503 SQVSLLERSSTHIRSLEPPAGLTTSNFSLMRLLGAVQKGWIRCNT---TIRKSGFGGITM 559

Query: 63  VLACYVLFSYSFSYKHLKHERLRK 86
           +   Y +   S+S++ LK +R RK
Sbjct: 560 LFTGYFVLCCSWSFRRLKLQRWRK 583


>gi|21361664 lung cancer-related protein 8 isoform a [Homo sapiens]
          Length = 609

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 3   SVVPVKDKKLLEVKLGELPSWILMRDFSPSGIFGAFQRGYYRYYNKYINVKKGSISGITM 62
           S V + ++    ++  E P+ +   +FS   + GA Q+G+ R       ++K    GITM
Sbjct: 503 SQVSLLERSSTHIRSLEPPAGLTTSNFSLMRLLGAVQKGWIRCNT---TIRKSGFGGITM 559

Query: 63  VLACYVLFSYSFSYKHLK 80
           +   Y +   S+S++ LK
Sbjct: 560 LFTGYFVLCCSWSFRRLK 577


>gi|187423910 solute carrier family 7, member 9 [Homo sapiens]
          Length = 487

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 47  NKYINVKKGSISGITMVLACYVLFSYSF 74
           N Y N+    I GI +V ACY+L + S+
Sbjct: 247 NPYRNLPLAIIIGIPLVTACYILMNVSY 274


>gi|7657591 solute carrier family 7, member 9 [Homo sapiens]
          Length = 487

 Score = 28.1 bits (61), Expect = 1.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 47  NKYINVKKGSISGITMVLACYVLFSYSF 74
           N Y N+    I GI +V ACY+L + S+
Sbjct: 247 NPYRNLPLAIIIGIPLVTACYILMNVSY 274


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.326    0.141    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,224,856
Number of Sequences: 37866
Number of extensions: 115092
Number of successful extensions: 298
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 15
length of query: 88
length of database: 18,247,518
effective HSP length: 60
effective length of query: 28
effective length of database: 15,975,558
effective search space: 447315624
effective search space used: 447315624
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.