Guide to the Human Genome
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Name: ERGIC2 Sequence: fasta or formatted (377aa) NCBI GI: 50959176
Description:

PTX1 protein

Referenced in:

Mammary Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         22           2
 C cysteine            1.3          5           2
 D aspartate           5.0         19           2
 E glutamate           5.8         22           2
 F phenylalanine       5.6         21           2
 G glycine             5.6         21           2
 H histidine           5.3         20           1
 I isoleucine          6.9         26           2
 K lysine              5.0         19           2
 L leucine             8.5         32           2
 M methionine          3.2         12           1
 N asparagine          3.7         14           2
 P proline             4.2         16           2
 Q glutamine           3.7         14           2
 R arginine            4.0         15           2
 S serine              8.0         30           2
 T threonine           6.6         25           2
 V valine              7.7         29           2
 W tryptophan          0.8          3           1
 Y tyrosine            3.2         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PTX1 protein 
ERGIC3                0.211   serologically defined breast cancer antigen 84 isofor...
ERGIC3                0.209   serologically defined breast cancer antigen 84 isofo...
ERGIC1                0.070   endoplasmic reticulum-golgi intermediate compartment...
DOCK2                 0.011   dedicator of cytokinesis 2 
ADAM23                0.007   ADAM metallopeptidase domain 23 preproprotein 
MSRA                  0.005   methionine sulfoxide reductase A isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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