Search of human proteins with 13376162

Search of human proteins with 13376162

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13376162 family with sequence similarity 57, member A [Homo
sapiens]
         (257 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13376162 family with sequence similarity 57, member A [Homo s...   530   e-151
gi|109638743 hypothetical protein LOC83723 [Homo sapiens]             254   7e-68
gi|31083053 ceroid-lipofuscinosis, neuronal 8 [Homo sapiens]           37   0.022

>gi|13376162 family with sequence similarity 57, member A [Homo
           sapiens]
          Length = 257

 Score =  530 bits (1366), Expect = e-151
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MLLTLAGGALFFPGLFALCTWALRRSQPGWSRTDCVMISTRLVSSVHAVLATGSGIVIIR 60
           MLLTLAGGALFFPGLFALCTWALRRSQPGWSRTDCVMISTRLVSSVHAVLATGSGIVIIR
Sbjct: 1   MLLTLAGGALFFPGLFALCTWALRRSQPGWSRTDCVMISTRLVSSVHAVLATGSGIVIIR 60

Query: 61  SCDDVITGRHWLAREYVWFLIPYMIYDSYAMYLCEWCRTRDQNRAPSLTLRNFLSRNRLM 120
           SCDDVITGRHWLAREYVWFLIPYMIYDSYAMYLCEWCRTRDQNRAPSLTLRNFLSRNRLM
Sbjct: 61  SCDDVITGRHWLAREYVWFLIPYMIYDSYAMYLCEWCRTRDQNRAPSLTLRNFLSRNRLM 120

Query: 121 ITHHAVILFVLVPVAQRLRGDLGDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLYKVN 180
           ITHHAVILFVLVPVAQRLRGDLGDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLYKVN
Sbjct: 121 ITHHAVILFVLVPVAQRLRGDLGDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLYKVN 180

Query: 181 GILTLATFLSCRILLFPFMYWSYGRQQGLSLLQVPFSIPFYCNVANAFLVAPQIYWFCLL 240
           GILTLATFLSCRILLFPFMYWSYGRQQGLSLLQVPFSIPFYCNVANAFLVAPQIYWFCLL
Sbjct: 181 GILTLATFLSCRILLFPFMYWSYGRQQGLSLLQVPFSIPFYCNVANAFLVAPQIYWFCLL 240

Query: 241 CRKAVRLFDTPQAKKDG 257
           CRKAVRLFDTPQAKKDG
Sbjct: 241 CRKAVRLFDTPQAKKDG 257


>gi|109638743 hypothetical protein LOC83723 [Homo sapiens]
          Length = 274

 Score =  254 bits (648), Expect = 7e-68
 Identities = 126/260 (48%), Positives = 169/260 (65%), Gaps = 12/260 (4%)

Query: 1   MLLTLAGGALFFPGLFALCTWALRR-SQPGWSRTDCVMISTRLVSSVHAVLATGSGIVII 59
           ML  +  G + FPGLF L    L+R  Q  W   D V++S RLVSSV A++A+ +G ++ 
Sbjct: 1   MLTPMVAGGVVFPGLFLLSKNTLQRLPQLRWEEADAVIVSARLVSSVQAIMASTAGYIVS 60

Query: 60  RSCDDVITGRHWLAREYVWFLIPYMIYDSYAMYLCEWCRTRDQN--------RAPSLT-- 109
            SC  +I  +HWL+  Y  F +PY IYD YAM+LC W + + +         RAP  T  
Sbjct: 61  TSCKHIIDDQHWLSSAYTQFAVPYFIYDIYAMFLCHWHKHQVKGHGGDDGAARAPGSTWA 120

Query: 110 -LRNFLSRNRLMITHHAVILFVLVPVAQRLRGDLGDFFVGCIFTAELSTPFVSLGRVLIQ 168
             R +L +  LM+ HHA ++ V  P++   R   GDFF+GC+  AE+STPFV LG++LIQ
Sbjct: 121 IARGYLHKEFLMVLHHAAMVLVCFPLSVVWRQGKGDFFLGCMLMAEVSTPFVCLGKILIQ 180

Query: 169 LKQQHTLLYKVNGILTLATFLSCRILLFPFMYWSYGRQQGLSLLQVPFSIPFYCNVANAF 228
            KQQHTLL+KVNG L L +FL CR+LLFP++YW+YGR  GL LL VP +IP + N+  A 
Sbjct: 181 YKQQHTLLHKVNGALMLLSFLCCRVLLFPYLYWAYGRHAGLPLLAVPLAIPAHVNLGAAL 240

Query: 229 LVAPQIYWFCLLCRKAVRLF 248
           L+APQ+YWF L+CR A RLF
Sbjct: 241 LLAPQLYWFFLICRGACRLF 260


>gi|31083053 ceroid-lipofuscinosis, neuronal 8 [Homo sapiens]
          Length = 286

 Score = 36.6 bits (83), Expect = 0.022
 Identities = 49/241 (20%), Positives = 96/241 (39%), Gaps = 28/241 (11%)

Query: 5   LAGGALFFPGLFALC---TWALRRSQPGWSRTDCVMISTRLVSSVHAVLATGSGIVIIRS 61
           +  G +F+ G+F +C   + +L  +       + V        +V  V +T +G+  +  
Sbjct: 28  MVAGFVFYLGVFVVCHQLSSSLNATYRSLVAREKVFWDLAATRAVFGVQSTAAGLWALLG 87

Query: 62  CDDVITGRHWLAREYVWFLIP----YMIYDSYAMYLCEWCRTRDQNRAPSLTLRNFLSRN 117
              +   +    + + WF I     +  +++ A++L             +L  R F   +
Sbjct: 88  DPVLHADKARGQQNWCWFHITTATGFFCFENVAVHLS------------NLIFRTF---D 132

Query: 118 RLMITHHAVILFVLVPVAQRLRGDLGDFFVGCIFTAELSTPFVSLGRVLIQLKQQHTLLY 177
             ++ HH       +     L+   G +        E+STPF  +  +L++     +L +
Sbjct: 133 LFLVIHHLFAFLGFLGCLVNLQA--GHYLAMTTLLLEMSTPFTCVSWMLLKAGWSESLFW 190

Query: 178 KVNGILTLATFLSCRILLFPFMYW-SYGRQQGL-SLLQVPFSIPFYCNVANAFLVAPQIY 235
           K+N  L +  F  CR++L   M+W  +    GL S L +P    F   +A   L+    Y
Sbjct: 191 KLNQWLMIHMF-HCRMVLTYHMWWVCFWHWDGLVSSLYLPHLTLFLVGLALLTLII-NPY 248

Query: 236 W 236
           W
Sbjct: 249 W 249


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.333    0.144    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,308,072
Number of Sequences: 37866
Number of extensions: 365681
Number of successful extensions: 1066
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1062
Number of HSP's gapped (non-prelim): 3
length of query: 257
length of database: 18,247,518
effective HSP length: 100
effective length of query: 157
effective length of database: 14,460,918
effective search space: 2270364126
effective search space used: 2270364126
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.