Search of human proteins with 13376042

Search of human proteins with 13376042

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13376042 dermal papilla derived protein 13 [Homo sapiens]
         (434 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13376042 dermal papilla derived protein 13 [Homo sapiens]          880   0.0  
gi|42794625 alpha-methylacyl-CoA racemase isoform 1 [Homo sapiens]    103   4e-22
gi|42822893 alpha-methylacyl-CoA racemase isoform 2 [Homo sapiens]     57   4e-08
gi|8923557 chromosome 20 open reading frame 11 [Homo sapiens]          30   3.3  
gi|218777837 abhydrolase domain containing 7 [Homo sapiens]            30   4.3  
gi|62899035 establishment of cohesion 1 homolog 2 [Homo sapiens]       30   5.6  
gi|156616290 collagen type VI alpha 6 [Homo sapiens]                   29   9.5  
gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens]      29   9.5  

>gi|13376042 dermal papilla derived protein 13 [Homo sapiens]
          Length = 434

 Score =  880 bits (2273), Expect = 0.0
 Identities = 434/434 (100%), Positives = 434/434 (100%)

Query: 1   MPSETHAMLATLARVAALRRTCLFSGRGGGRGLWTGRPQSDMNNIKPLEGVKILDLTRVL 60
           MPSETHAMLATLARVAALRRTCLFSGRGGGRGLWTGRPQSDMNNIKPLEGVKILDLTRVL
Sbjct: 1   MPSETHAMLATLARVAALRRTCLFSGRGGGRGLWTGRPQSDMNNIKPLEGVKILDLTRVL 60

Query: 61  AGPFATMNLGDLGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVNRNKKSIAVNIKDP 120
           AGPFATMNLGDLGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVNRNKKSIAVNIKDP
Sbjct: 61  AGPFATMNLGDLGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVNRNKKSIAVNIKDP 120

Query: 121 KGVKIIYCSITGYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATGL 180
           KGVKIIYCSITGYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATGL
Sbjct: 121 KGVKIIYCSITGYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATGL 180

Query: 181 YAYGAIMAGLIQKYKTGKGLFIDCNLLSSQVACLSHIAANYLIGQKEAKRWGTAHGSIVP 240
           YAYGAIMAGLIQKYKTGKGLFIDCNLLSSQVACLSHIAANYLIGQKEAKRWGTAHGSIVP
Sbjct: 181 YAYGAIMAGLIQKYKTGKGLFIDCNLLSSQVACLSHIAANYLIGQKEAKRWGTAHGSIVP 240

Query: 241 YQAFKTKDGYIVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIKILSERF 300
           YQAFKTKDGYIVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIKILSERF
Sbjct: 241 YQAFKTKDGYIVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIKILSERF 300

Query: 301 EEELTSKWLYLFEGSGVPYGPINNMKNVFAEPQNAVSGFQSLLHSLAHGPFLHLQGSARV 360
           EEELTSKWLYLFEGSGVPYGPINNMKNVFAEPQNAVSGFQSLLHSLAHGPFLHLQGSARV
Sbjct: 301 EEELTSKWLYLFEGSGVPYGPINNMKNVFAEPQNAVSGFQSLLHSLAHGPFLHLQGSARV 360

Query: 361 LHNGLVMEMEHPTVGKISVPGPAVRYSKFKMSEARPPPLLGQHTTHILKEVLRYDDRAIG 420
           LHNGLVMEMEHPTVGKISVPGPAVRYSKFKMSEARPPPLLGQHTTHILKEVLRYDDRAIG
Sbjct: 361 LHNGLVMEMEHPTVGKISVPGPAVRYSKFKMSEARPPPLLGQHTTHILKEVLRYDDRAIG 420

Query: 421 ELLSAGVVDQHETH 434
           ELLSAGVVDQHETH
Sbjct: 421 ELLSAGVVDQHETH 434


>gi|42794625 alpha-methylacyl-CoA racemase isoform 1 [Homo sapiens]
          Length = 382

 Score =  103 bits (256), Expect = 4e-22
 Identities = 84/332 (25%), Positives = 141/332 (42%), Gaps = 62/332 (18%)

Query: 48  LEGVKILDLTRVLAGPFATMNLGDLGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVN 107
           L+G+ +++L+ +  GPF  M L D GA V++V+RPG+  D    G               
Sbjct: 3   LQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLG--------------- 47

Query: 108 RNKKSIAVNIKDPKGV-------------------------------------KIIYCSI 130
           R K+S+ +++K P+G                                      ++IY  +
Sbjct: 48  RGKRSLVLDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARL 107

Query: 131 TGYGQTGPISQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATG--LYAYGAIMA 188
           +G+GQ+G   + AG+D    A+SG++   G    +P  P   + D A G  + A G IMA
Sbjct: 108 SGFGQSGSFCRLAGHDINYLALSGVLSKIGRSGENPYAPLNLLADFAGGGLMCALGIIMA 167

Query: 189 GLIQKYKTGKGLFIDCNLLSSQVACLSHIAANYLIGQKEAKR-WGTAHGSIVPYQAFKTK 247
            L  + +TGKG  ID N++       S +     +   EA R      G    Y  ++T 
Sbjct: 168 -LFDRTRTGKGQVIDANMVEGTAYLSSFLWKTQKLSLWEAPRGQNMLDGGAPFYTTYRTA 226

Query: 248 DG-YIVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIKILSERFEEELTS 306
           DG ++ VGA   Q +  + K L L      S    N + + +  E+ K  ++ F E+  +
Sbjct: 227 DGEFMAVGAIEPQFYELLIKGLGL-----KSDELPNQMSMDDWPEMKKKFADVFAEKTKA 281

Query: 307 KWLYLFEGSGVPYGPINNMKNVFAEPQNAVSG 338
           +W  +F+G+     P+   + V     N   G
Sbjct: 282 EWCQIFDGTDACVTPVLTFEEVVHHDHNKERG 313


>gi|42822893 alpha-methylacyl-CoA racemase isoform 2 [Homo sapiens]
          Length = 198

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 36/144 (25%), Positives = 62/144 (43%), Gaps = 52/144 (36%)

Query: 48  LEGVKILDLTRVLAGPFATMNLGDLGAEVIKVERPGAGDDTRTWGPPFVGTESTYYLSVN 107
           L+G+ +++L+ +  GPF  M L D GA V++V+RPG+  D    G               
Sbjct: 3   LQGISVVELSGLAPGPFCAMVLADFGARVVRVDRPGSRYDVSRLG--------------- 47

Query: 108 RNKKSIAVNIKDPKGV-------------------------------------KIIYCSI 130
           R K+S+ +++K P+G                                      ++IY  +
Sbjct: 48  RGKRSLVLDLKQPRGAAVLRRLCKRSDVLLEPFRRGVMEKLQLGPEILQRENPRLIYARL 107

Query: 131 TGYGQTGPISQRAGYDAVASAVSG 154
           +G+GQ+G   + AG+D    A+SG
Sbjct: 108 SGFGQSGSFCRLAGHDINYLALSG 131


>gi|8923557 chromosome 20 open reading frame 11 [Homo sapiens]
          Length = 228

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 7/96 (7%)

Query: 205 NLLSSQVACLSHIAANYLI--GQKEAKRWGTAHGSIVPYQAFKTKDGYI----VVGAGNN 258
           N L  Q A ++ +  NYL+  G KEA         I P    +T D  I    ++  G  
Sbjct: 20  NNLHVQRADMNRLIMNYLVTEGFKEAAEKFRMESGIEPSVDLETLDERIKIREMILKGQI 79

Query: 259 QQFATVCKILDLPELIDNSKYKTNHLRVHNRKELIK 294
           Q+   +   L  PEL+D ++Y   HL+  +  ELI+
Sbjct: 80  QEAIALINSLH-PELLDTNRYLYFHLQQQHLIELIR 114


>gi|218777837 abhydrolase domain containing 7 [Homo sapiens]
          Length = 362

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 13/72 (18%)

Query: 308 WLYLFEGSGVPYGPINNMKNVFAEPQNAVSGFQSLLHSLAHGPFLHLQGSARVLHNGLVM 367
           ++Y+F   G   GPIN+ +N+F+           L H +   P L L G      N   M
Sbjct: 264 YIYVFSQPGALSGPINHYRNIFS--------CLPLKHHMVTTPTLLLWG-----ENDAFM 310

Query: 368 EMEHPTVGKISV 379
           E+E   V KI V
Sbjct: 311 EVEMAEVTKIYV 322


>gi|62899035 establishment of cohesion 1 homolog 2 [Homo sapiens]
          Length = 601

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 245 KTKDGYIVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNR-KELIKILSERFEEE 303
           KTKD  +++ AG     ATVCK   +     N + +  H++ H+R  E IK +  + E  
Sbjct: 370 KTKD-QLIIDAGQKHFGATVCKSCGMIYTASNPEDEMQHVQHHHRFLEGIKYVGWKKERV 428

Query: 304 LTSKW 308
           +   W
Sbjct: 429 VAEFW 433


>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
          Length = 2263

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 389 FKMSEARPPPLLGQHTTHILKEVLRYDDRAIGEL 422
           F +   R   +  Q+ THI+K+V++Y + A+ ++
Sbjct: 184 FNLRTVRDLSMFSQNMTHIIKDVIKYKEGAVDDI 217


>gi|116235478 establishment of cohesion 1 homolog 1 [Homo sapiens]
          Length = 840

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 242 QAFKTKDGYIVVGAGNNQQFATVCKILDLPELIDNSKYKTNHLRVHNR 289
           +A KT +  +++ AG  +  A  C +  +     N + +T HL  HN+
Sbjct: 596 EAEKTDEKQLIIDAGQKRFGAVSCNVCGMLYTASNPEDETQHLLFHNQ 643


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.136    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,575,444
Number of Sequences: 37866
Number of extensions: 829574
Number of successful extensions: 1688
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1677
Number of HSP's gapped (non-prelim): 10
length of query: 434
length of database: 18,247,518
effective HSP length: 105
effective length of query: 329
effective length of database: 14,271,588
effective search space: 4695352452
effective search space used: 4695352452
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.