Search of human proteins with 4758792

Search of human proteins with 4758792

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4758792 NADH dehydrogenase (ubiquinone) Fe-S protein 6,
13kDa (NADH-coenzyme Q reductase) [Homo sapiens]
         (124 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4758792 NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa...   261   7e-71
gi|4557237 acetyl-Coenzyme A acetyltransferase 1 precursor [Homo...    32   0.16 
gi|167614485 acetyl-coenzyme A acyltransferase 2 [Homo sapiens]        27   3.1  
gi|47271376 zinc finger protein 615 [Homo sapiens]                     27   4.0  
gi|169217429 PREDICTED: similar to CYorf16 protein [Homo sapiens]      26   6.9  
gi|224282165 zinc finger protein 200 isoform 3 [Homo sapiens]          26   8.9  
gi|224282163 zinc finger protein 200 isoform 3 [Homo sapiens]          26   8.9  
gi|224282161 zinc finger protein 200 isoform 3 [Homo sapiens]          26   8.9  
gi|37675270 zinc finger protein 200 isoform 1 [Homo sapiens]           26   8.9  
gi|37675268 zinc finger protein 200 isoform 2 [Homo sapiens]           26   8.9  
gi|37675273 zinc finger protein 200 isoform 1 [Homo sapiens]           26   8.9  
gi|118572588 cyclin F [Homo sapiens]                                   26   8.9  

>gi|4758792 NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kDa
           (NADH-coenzyme Q reductase) [Homo sapiens]
          Length = 124

 Score =  261 bits (668), Expect = 7e-71
 Identities = 124/124 (100%), Positives = 124/124 (100%)

Query: 1   MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ 60
           MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ
Sbjct: 1   MAAAMTFCRLLNRCGEAARSLPLGARCFGVRVSPTGEKVTHTGQVYDDKDYRRIRFVGRQ 60

Query: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFR 120
           KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFR
Sbjct: 61  KEVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTGTCGYCGLQFR 120

Query: 121 QHHH 124
           QHHH
Sbjct: 121 QHHH 124


>gi|4557237 acetyl-Coenzyme A acetyltransferase 1 precursor [Homo
           sapiens]
          Length = 427

 Score = 31.6 bits (70), Expect = 0.16
 Identities = 13/36 (36%), Positives = 24/36 (66%)

Query: 62  EVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHP 97
           EVNE F++ ++A   + E++ + +  +GG  +LGHP
Sbjct: 351 EVNEAFSLVVLANIKMLEIDPQKVNINGGAVSLGHP 386


>gi|167614485 acetyl-coenzyme A acyltransferase 2 [Homo sapiens]
          Length = 397

 Score = 27.3 bits (59), Expect = 3.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)

Query: 62  EVNENFAIDLIAEQPVSEVETRVIACDGGGGALGHP 97
           EVNE FA   +A +   +++      +GG  ALGHP
Sbjct: 318 EVNEAFAPQYLAVERSLDLDISKTNVNGGAIALGHP 353


>gi|47271376 zinc finger protein 615 [Homo sapiens]
          Length = 731

 Score = 26.9 bits (58), Expect = 4.0
 Identities = 32/124 (25%), Positives = 47/124 (37%), Gaps = 18/124 (14%)

Query: 14  CGEAARSLPLGARCFGVRVSPTGEK---VTHTGQVYDDKDY---RRIRFVGRQKEVNENF 67
           CGE  +  P   R  G + + TGEK       G+ + +K +    R    G +  V    
Sbjct: 514 CGECGKGFPAKIRLMGHQRTHTGEKPYICNECGKGFTEKSHLNVHRRTHTGEKPYVCSEC 573

Query: 68  AID------LIAEQPVSEVETRVIACDGGGGALGHPKVYINLDKETKTG----TCGYCGL 117
             D      LIA Q     E   I  + G G     K  +++ ++T TG     C  C  
Sbjct: 574 GKDLTGKSMLIAHQRTHTGEKPYICNECGKGFT--MKSTLSIHQQTHTGEKPYKCNECDK 631

Query: 118 QFRQ 121
            FR+
Sbjct: 632 TFRK 635


>gi|169217429 PREDICTED: similar to CYorf16 protein [Homo sapiens]
          Length = 152

 Score = 26.2 bits (56), Expect = 6.9
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 56  FVGRQKEVNENFAIDL--------IAEQPVSEVETRVIACDGGGGALGHPKVYINLD--- 104
           +VG+  EV   + +DL            PVSE     I   GG     HP +Y + +   
Sbjct: 4   WVGKHAEVLLCYVMDLQVRLGSWVCGRSPVSEWRNSAIPVTGGRMISFHPNLYFHSEIIM 63

Query: 105 KETKTGTCGY 114
           KE   G  GY
Sbjct: 64  KEHCVGILGY 73


>gi|224282165 zinc finger protein 200 isoform 3 [Homo sapiens]
          Length = 394

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 87  CDGGGGALGHPKVYINLDKETKTG----TCGYCGLQFRQHHH 124
           C+  G +  H K  +N  +   TG    +C  CG  FRQ+ H
Sbjct: 281 CNHCGKSFNH-KTNLNKHERIHTGEKPYSCSQCGKNFRQNSH 321


>gi|224282163 zinc finger protein 200 isoform 3 [Homo sapiens]
          Length = 394

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 87  CDGGGGALGHPKVYINLDKETKTG----TCGYCGLQFRQHHH 124
           C+  G +  H K  +N  +   TG    +C  CG  FRQ+ H
Sbjct: 281 CNHCGKSFNH-KTNLNKHERIHTGEKPYSCSQCGKNFRQNSH 321


>gi|224282161 zinc finger protein 200 isoform 3 [Homo sapiens]
          Length = 394

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 87  CDGGGGALGHPKVYINLDKETKTG----TCGYCGLQFRQHHH 124
           C+  G +  H K  +N  +   TG    +C  CG  FRQ+ H
Sbjct: 281 CNHCGKSFNH-KTNLNKHERIHTGEKPYSCSQCGKNFRQNSH 321


>gi|37675270 zinc finger protein 200 isoform 1 [Homo sapiens]
          Length = 395

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 87  CDGGGGALGHPKVYINLDKETKTG----TCGYCGLQFRQHHH 124
           C+  G +  H K  +N  +   TG    +C  CG  FRQ+ H
Sbjct: 282 CNHCGKSFNH-KTNLNKHERIHTGEKPYSCSQCGKNFRQNSH 322


>gi|37675268 zinc finger protein 200 isoform 2 [Homo sapiens]
          Length = 394

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 87  CDGGGGALGHPKVYINLDKETKTG----TCGYCGLQFRQHHH 124
           C+  G +  H K  +N  +   TG    +C  CG  FRQ+ H
Sbjct: 281 CNHCGKSFNH-KTNLNKHERIHTGEKPYSCSQCGKNFRQNSH 321


>gi|37675273 zinc finger protein 200 isoform 1 [Homo sapiens]
          Length = 395

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 87  CDGGGGALGHPKVYINLDKETKTG----TCGYCGLQFRQHHH 124
           C+  G +  H K  +N  +   TG    +C  CG  FRQ+ H
Sbjct: 282 CNHCGKSFNH-KTNLNKHERIHTGEKPYSCSQCGKNFRQNSH 322


>gi|118572588 cyclin F [Homo sapiens]
          Length = 786

 Score = 25.8 bits (55), Expect = 8.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 88  DGGGGALGHPKVYINLDKETKTGTC 112
           DGG GAL  P   ++LD ++ T  C
Sbjct: 715 DGGLGALPQPTSVLSLDSDSHTQPC 739


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.139    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,909,867
Number of Sequences: 37866
Number of extensions: 206693
Number of successful extensions: 596
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 13
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.