Search of human proteins with 4758788

Search of human proteins with 4758788

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4758788 NADH dehydrogenase (ubiquinone) Fe-S protein 3
precursor [Homo sapiens]
         (264 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4758788 NADH dehydrogenase (ubiquinone) Fe-S protein 3 precur...   537   e-153
gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens]      33   0.20 
gi|114199475 vacuolar protein sorting 41 isoform 1 [Homo sapiens]      33   0.20 
gi|23312378 protein phosphatase with EF hand calcium-binding dom...    32   0.74 
gi|145701005 hypothetical protein LOC375759 [Homo sapiens]             32   0.74 
gi|156616290 collagen type VI alpha 6 [Homo sapiens]                   30   2.2  
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int...    29   4.8  

>gi|4758788 NADH dehydrogenase (ubiquinone) Fe-S protein 3 precursor
           [Homo sapiens]
          Length = 264

 Score =  537 bits (1384), Expect = e-153
 Identities = 264/264 (100%), Positives = 264/264 (100%)

Query: 1   MAAAAVARLWWRGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSA 60
           MAAAAVARLWWRGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSA
Sbjct: 1   MAAAAVARLWWRGILGASALTRGTGRPSVLLLPVRRESAGADTRPTVRPRNDVAHKQLSA 60

Query: 61  FGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVP 120
           FGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVP
Sbjct: 61  FGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAVDVP 120

Query: 121 TRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFAN 180
           TRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFAN
Sbjct: 121 TRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFAN 180

Query: 181 HPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWE 240
           HPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWE
Sbjct: 181 HPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWE 240

Query: 241 AFPVYRQPPESLKLEAGDKKPDAK 264
           AFPVYRQPPESLKLEAGDKKPDAK
Sbjct: 241 AFPVYRQPPESLKLEAGDKKPDAK 264


>gi|114199473 vacuolar protein sorting 41 isoform 2 [Homo sapiens]
          Length = 829

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 81  FNELEVCIHPDGVIP-VLTFLRDHTNAQFKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNS 139
           ++E ++ ++ +   P +L FLRD T+   +      A+++  ++N  E    LLS   NS
Sbjct: 587 YHEKQISLYAEYDRPNLLPFLRDSTHCPLEK-----ALEICQQRNFVEETVYLLSRMGNS 641

Query: 140 RIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHP 182
           R  +K   +EL  ++ A+   K  +  + E+W+   ++  + P
Sbjct: 642 RSALKMIMEELHDVDKAIEFAKEQD--DGELWEDLILYSIDKP 682


>gi|114199475 vacuolar protein sorting 41 isoform 1 [Homo sapiens]
          Length = 854

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 25/103 (24%), Positives = 52/103 (50%), Gaps = 8/103 (7%)

Query: 81  FNELEVCIHPDGVIP-VLTFLRDHTNAQFKSLVDLTAVDVPTRQNRFEIVYNLLSLRFNS 139
           ++E ++ ++ +   P +L FLRD T+   +      A+++  ++N  E    LLS   NS
Sbjct: 612 YHEKQISLYAEYDRPNLLPFLRDSTHCPLEK-----ALEICQQRNFVEETVYLLSRMGNS 666

Query: 140 RIRVKTYTDELTPIESAVSVFKAANWYEREIWDMFGVFFANHP 182
           R  +K   +EL  ++ A+   K  +  + E+W+   ++  + P
Sbjct: 667 RSALKMIMEELHDVDKAIEFAKEQD--DGELWEDLILYSIDKP 707


>gi|23312378 protein phosphatase with EF hand calcium-binding domain
           1 isoform 3 [Homo sapiens]
          Length = 591

 Score = 31.6 bits (70), Expect = 0.74
 Identities = 27/121 (22%), Positives = 53/121 (43%), Gaps = 6/121 (4%)

Query: 52  DVAHKQLSAFGEYVAEILPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSL 111
           ++ HK     G+ + +IL ++   + +    + E+ +   G+         H   + K  
Sbjct: 248 EILHKY-KLHGKRILQILEEFYAWLPIGTIVDNEILVIHGGISETTDLNLLHRVERNKMK 306

Query: 112 VDLTAVDVPTRQNRFEIVYNLLSLRFNSRIRVKTY---TDELTPIE--SAVSVFKAANWY 166
             L       R +  +  +N + + FN+  R+KT    T+ LT  E    V++F A+N+Y
Sbjct: 307 SVLIPPTETNRDHDTDSKHNKVGVTFNAHGRIKTNGSPTEHLTEHEWEQVVTIFSASNYY 366

Query: 167 E 167
           E
Sbjct: 367 E 367


>gi|145701005 hypothetical protein LOC375759 [Homo sapiens]
          Length = 431

 Score = 31.6 bits (70), Expect = 0.74
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 20  LTRGTGRPSVLLLPVRRESAGADTRP--TVRPRNDVAHKQLSAFGEYVAEILP----KYV 73
           L R    P +L     RESA     P    RPR  VA +     G ++ E+LP    +++
Sbjct: 96  LLRSLLPPPLLSAGASRESAPRQPGPGERERPRRRVAREDPDFLGAFLGELLPSRFREFL 155

Query: 74  QQVQVSCFNELEVCIHP 90
            Q+Q  C  E E    P
Sbjct: 156 HQLQEKCAEEPEPLTSP 172


>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
          Length = 2263

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 69   LPKYVQQVQVSCFNELEVCIHPDGVIPVLTFLRDHTNAQFKSLVDLTAV---DVPTRQNR 125
            L +YV+        + E  +HP  ++  L   RD T  +F+ + ++ A    D+  R+N 
Sbjct: 1734 LIQYVRDRSPGRHGKPECPVHPTELVFALDHSRDVTEQEFERMKEMMAFLVRDIKVRENS 1793

Query: 126  FEIVYNLLSLRFNSRIR 142
              +  ++  L +NS  R
Sbjct: 1794 CPVGAHIAILSYNSHAR 1810


>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
           interacting protein [Homo sapiens]
          Length = 1211

 Score = 28.9 bits (63), Expect = 4.8
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 63  EYVAEILPKYVQQVQVSCFNELEVCIHPD---GVIPVLTFLRDHTNAQFKSLVDLTAVDV 119
           ++VAEILP  ++    +   +LE  + P    GV   L     H N     +     +D 
Sbjct: 379 QWVAEILPSSIRVQGRTFSQQLEHLLTPPERYGVCRALESFFQHRNIDTLIVDVYPVLDT 438

Query: 120 PTRQNRFEIVYNLLS 134
           P +Q  ++ +Y LL+
Sbjct: 439 PAKQVLWQFIYQLLT 453


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,860,276
Number of Sequences: 37866
Number of extensions: 410981
Number of successful extensions: 811
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 810
Number of HSP's gapped (non-prelim): 7
length of query: 264
length of database: 18,247,518
effective HSP length: 100
effective length of query: 164
effective length of database: 14,460,918
effective search space: 2371590552
effective search space used: 2371590552
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.