Search of human proteins with 4757804

Search of human proteins with 4757804

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4757804 antioxidant protein 1 [Homo sapiens]
         (68 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4757804 antioxidant protein 1 [Homo sapiens]                       141   1e-34
gi|4826665 copper chaperone for superoxide dismutase [Homo sapiens]    35   0.010
gi|115529486 ATPase, Cu++ transporting, alpha polypeptide [Homo ...    27   3.5  
gi|172073175 microtubule associated serine/threonine kinase-like...    27   3.5  

>gi|4757804 antioxidant protein 1 [Homo sapiens]
          Length = 68

 Score =  141 bits (355), Expect = 1e-34
 Identities = 68/68 (100%), Positives = 68/68 (100%)

Query: 1  MPKHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGK 60
          MPKHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGK
Sbjct: 1  MPKHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGK 60

Query: 61 TVSYLGLE 68
          TVSYLGLE
Sbjct: 61 TVSYLGLE 68


>gi|4826665 copper chaperone for superoxide dismutase [Homo
          sapiens]
          Length = 274

 Score = 35.4 bits (80), Expect = 0.010
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 5  EFSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVS 63
          EF+V MTC  C +AV + L  + GV+  ++ L ++ V + +      + A L+ TG+   
Sbjct: 15 EFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAV 74

Query: 64 YLGL 67
            G+
Sbjct: 75 LKGM 78


>gi|115529486 ATPase, Cu++ transporting, alpha polypeptide [Homo
           sapiens]
          Length = 1500

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 10  MTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESE---HSMDTLLATLKKTG 59
           MTC  C +++  V++K  GVK   + L N    +E +    S +TL   ++  G
Sbjct: 386 MTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMG 439


>gi|172073175 microtubule associated serine/threonine kinase-like
           [Homo sapiens]
          Length = 878

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 35  LPNKKVCIESEHSMDTLLATLKKTGKTVSYLGLE 68
           + NKK C+E +H+  T   T + TG TV    L+
Sbjct: 459 IQNKKTCVEYKHNEMTNCYTNQNTGLTVEVQDLK 492


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,342,468
Number of Sequences: 37866
Number of extensions: 68850
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 123
Number of HSP's gapped (non-prelim): 5
length of query: 68
length of database: 18,247,518
effective HSP length: 41
effective length of query: 27
effective length of database: 16,695,012
effective search space: 450765324
effective search space used: 450765324
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.