BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4757804 antioxidant protein 1 [Homo sapiens] (68 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4757804 antioxidant protein 1 [Homo sapiens] 141 1e-34 gi|4826665 copper chaperone for superoxide dismutase [Homo sapiens] 35 0.010 gi|115529486 ATPase, Cu++ transporting, alpha polypeptide [Homo ... 27 3.5 gi|172073175 microtubule associated serine/threonine kinase-like... 27 3.5 >gi|4757804 antioxidant protein 1 [Homo sapiens] Length = 68 Score = 141 bits (355), Expect = 1e-34 Identities = 68/68 (100%), Positives = 68/68 (100%) Query: 1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGK 60 MPKHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGK Sbjct: 1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGVKYDIDLPNKKVCIESEHSMDTLLATLKKTGK 60 Query: 61 TVSYLGLE 68 TVSYLGLE Sbjct: 61 TVSYLGLE 68 >gi|4826665 copper chaperone for superoxide dismutase [Homo sapiens] Length = 274 Score = 35.4 bits (80), Expect = 0.010 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Query: 5 EFSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTGKTVS 63 EF+V MTC C +AV + L + GV+ ++ L ++ V + + + A L+ TG+ Sbjct: 15 EFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAV 74 Query: 64 YLGL 67 G+ Sbjct: 75 LKGM 78 >gi|115529486 ATPase, Cu++ transporting, alpha polypeptide [Homo sapiens] Length = 1500 Score = 26.9 bits (58), Expect = 3.5 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query: 10 MTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESE---HSMDTLLATLKKTG 59 MTC C +++ V++K GVK + L N +E + S +TL ++ G Sbjct: 386 MTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMG 439 >gi|172073175 microtubule associated serine/threonine kinase-like [Homo sapiens] Length = 878 Score = 26.9 bits (58), Expect = 3.5 Identities = 13/34 (38%), Positives = 19/34 (55%) Query: 35 LPNKKVCIESEHSMDTLLATLKKTGKTVSYLGLE 68 + NKK C+E +H+ T T + TG TV L+ Sbjct: 459 IQNKKTCVEYKHNEMTNCYTNQNTGLTVEVQDLK 492 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.316 0.133 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,342,468 Number of Sequences: 37866 Number of extensions: 68850 Number of successful extensions: 128 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 123 Number of HSP's gapped (non-prelim): 5 length of query: 68 length of database: 18,247,518 effective HSP length: 41 effective length of query: 27 effective length of database: 16,695,012 effective search space: 450765324 effective search space used: 450765324 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.