Search of human proteins with 4507835

Search of human proteins with 4507835

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4507835 uridine monophosphate synthase [Homo sapiens]
         (480 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4507835 uridine monophosphate synthase [Homo sapiens]              934   0.0  
gi|122891872 microcephalin [Homo sapiens]                              31   2.2  
gi|15147335 nuclear receptor coactivator 5 [Homo sapiens]              31   2.8  
gi|193083134 melanocortin 1 receptor [Homo sapiens]                    30   6.3  

>gi|4507835 uridine monophosphate synthase [Homo sapiens]
          Length = 480

 Score =  934 bits (2413), Expect = 0.0
 Identities = 480/480 (100%), Positives = 480/480 (100%)

Query: 1   MAVARAALGPLVTGLYDVQAFKFGDFVLKSGLSSPIYIDLRGIVSRPRLLSQVADILFQT 60
           MAVARAALGPLVTGLYDVQAFKFGDFVLKSGLSSPIYIDLRGIVSRPRLLSQVADILFQT
Sbjct: 1   MAVARAALGPLVTGLYDVQAFKFGDFVLKSGLSSPIYIDLRGIVSRPRLLSQVADILFQT 60

Query: 61  AQNAGISFDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLVEGTINPGETCL 120
           AQNAGISFDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLVEGTINPGETCL
Sbjct: 61  AQNAGISFDTVCGVPYTALPLATVICSTNQIPMLIRRKETKDYGTKRLVEGTINPGETCL 120

Query: 121 IIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLLDREQGGKDKLQAHGIRLHSVCTLSKML 180
           IIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLLDREQGGKDKLQAHGIRLHSVCTLSKML
Sbjct: 121 IIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLLDREQGGKDKLQAHGIRLHSVCTLSKML 180

Query: 181 EILEQQKKVDAETVGRVKRFIQENVFVAANHNGSPLSIKEAPKELSFGARAELPRIHPVA 240
           EILEQQKKVDAETVGRVKRFIQENVFVAANHNGSPLSIKEAPKELSFGARAELPRIHPVA
Sbjct: 181 EILEQQKKVDAETVGRVKRFIQENVFVAANHNGSPLSIKEAPKELSFGARAELPRIHPVA 240

Query: 241 SKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELIT 300
           SKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELIT
Sbjct: 241 SKLLRLMQKKETNLCLSADVSLARELLQLADALGPSICMLKTHVDILNDFTLDVMKELIT 300

Query: 301 LAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLP 360
           LAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLP
Sbjct: 301 LAKCHEFLIFEDRKFADIGNTVKKQYEGGIFKIASWADLVNAHVVPGSGVVKGLQEVGLP 360

Query: 361 LHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPEFLHLTPGVQ 420
           LHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPEFLHLTPGVQ
Sbjct: 361 LHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFISGSRVSMKPEFLHLTPGVQ 420

Query: 421 LEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRLGV 480
           LEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRLGV
Sbjct: 421 LEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAYLSRLGV 480


>gi|122891872 microcephalin [Homo sapiens]
          Length = 835

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 30/150 (20%)

Query: 111 GTINPGETCLIIEDVVTSGSSVLETVEVLQKEGLKVTDAIVLLDREQGGKDKLQAHGIRL 170
           GT N  +T      +V  G+ V +T         K    ++  D  Q   DK Q  G++L
Sbjct: 20  GTENYSKT--FTTQLVDMGAKVSKTFN-------KQVTHVIFKDGYQSTWDKAQKRGVKL 70

Query: 171 HSVCTLSKMLEILEQQKKVDAETVGRVKRFIQENVFVAANHNGSPLSIKEA------PKE 224
            SV  + K              T G     I E++F AAN N    S+ +       PK+
Sbjct: 71  VSVLWVEK------------CRTAGA---HIDESLFPAANMNEHLSSLIKKKRKCMQPKD 115

Query: 225 LSFGARAELPRIHPVASKLLRLMQKKETNL 254
            +F       R      K+ + +Q+++TNL
Sbjct: 116 FNFKTPENDKRFQKKFEKMAKELQRQKTNL 145


>gi|15147335 nuclear receptor coactivator 5 [Homo sapiens]
          Length = 579

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 22/108 (20%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 137 EVLQKEGLKVTDAIVLLDREQGGKDKLQAHGIRLHSVCTLSKMLEILEQQKKVDAETVGR 196
           E + ++  K+ D  +L +RE+GG ++    G+R      +  ++ +L   + + AE   +
Sbjct: 307 EEIARQAAKMADEAILQERERGGPEE----GVRGGHPPAIQSLINLLADNRYLTAEETDK 362

Query: 197 VKRFIQENV--FVAANHNGSPLSIKEAPKELSFGARAEL-PRIHPVAS 241
           +  +++E     + ++ +  P  I   P   + GA  +  P   P+ S
Sbjct: 363 IINYLRERKERLMRSSTDSLPGPISRQPLGATSGASLKTQPSSQPLQS 410


>gi|193083134 melanocortin 1 receptor [Homo sapiens]
          Length = 317

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 119 CLIIEDVVTSGSSVLETVEVLQKE-GLKVTDAIVL 152
           CL + D++ SGS+VLET  +L  E G  V  A VL
Sbjct: 79  CLALSDLLVSGSNVLETAVILLLEAGALVARAAVL 113


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,729,362
Number of Sequences: 37866
Number of extensions: 697677
Number of successful extensions: 1473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 4
length of query: 480
length of database: 18,247,518
effective HSP length: 106
effective length of query: 374
effective length of database: 14,233,722
effective search space: 5323412028
effective search space used: 5323412028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.