Search of human proteins with 4506587

Search of human proteins with 4506587

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506587 replication protein A3, 14kDa [Homo sapiens]
         (121 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506587 replication protein A3, 14kDa [Homo sapiens]               248   8e-67
gi|23397659 alpha/beta hydrolase domain containing protein 2 [Ho...    29   0.74 
gi|23397661 alpha/beta hydrolase domain containing protein 2 [Ho...    29   0.74 
gi|52485606 formin-like 2 [Homo sapiens]                               27   3.7  
gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens]             27   3.7  
gi|119120861 formin-like 3 isoform 2 [Homo sapiens]                    26   6.3  
gi|119120874 formin-like 3 isoform 1 [Homo sapiens]                    26   6.3  
gi|104487002 protein tyrosine phosphatase, receptor type, D isof...    26   8.2  
gi|4506309 protein tyrosine phosphatase, receptor type, D isofor...    26   8.2  
gi|18860890 protein tyrosine phosphatase, receptor type, D isofo...    26   8.2  
gi|18860892 protein tyrosine phosphatase, receptor type, D isofo...    26   8.2  
gi|18860894 protein tyrosine phosphatase, receptor type, D isofo...    26   8.2  
gi|167003762 hypothetical protein LOC645090 [Homo sapiens]             26   8.2  

>gi|4506587 replication protein A3, 14kDa [Homo sapiens]
          Length = 121

 Score =  248 bits (633), Expect = 8e-67
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MVDMMDLPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLD 60
           MVDMMDLPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLD
Sbjct: 1   MVDMMDLPRSRINAGMLAQFIDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLD 60

Query: 61  EEISGIVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQFYPLGIVQH 120
           EEISGIVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQFYPLGIVQH
Sbjct: 61  EEISGIVEVVGRVTAKATILCTSYVQFKEDSHPFDLGLYNEAVKIIHDFPQFYPLGIVQH 120

Query: 121 D 121
           D
Sbjct: 121 D 121


>gi|23397659 alpha/beta hydrolase domain containing protein 2 [Homo
           sapiens]
          Length = 425

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 28  VGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISG 65
           +GR+   HP G    ++  +G   T +L EPL E   G
Sbjct: 86  MGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEHCVG 123


>gi|23397661 alpha/beta hydrolase domain containing protein 2 [Homo
           sapiens]
          Length = 425

 Score = 29.3 bits (64), Expect = 0.74
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 28  VGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISG 65
           +GR+   HP G    ++  +G   T +L EPL E   G
Sbjct: 86  MGRVRSPHPYGHRKFITMSDGATSTFDLFEPLAEHCVG 123


>gi|52485606 formin-like 2 [Homo sapiens]
          Length = 1092

 Score = 26.9 bits (58), Expect = 3.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 42  ILSDGEGKNGTIELMEPLDEEISGIVE 68
           +L D E KN  +E +E L+E IS + E
Sbjct: 381 LLEDAETKNAALERVEELEENISHLSE 407


>gi|165932370 FAT tumor suppressor homolog 4 [Homo sapiens]
          Length = 4981

 Score = 26.9 bits (58), Expect = 3.7
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 49  KNGTIELMEPLD-----EEISGIVEVVGRVTAKATILCTSYVQFKEDSHP 93
           KNGTI L+ PLD      +I  +   +G     ++++ T YV    D+ P
Sbjct: 945 KNGTISLLGPLDVHAGSYQIEILASDMGVPQLSSSVILTVYVHDVNDNSP 994


>gi|119120861 formin-like 3 isoform 2 [Homo sapiens]
          Length = 976

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 42  ILSDGEGKNGTIELMEPLDEEISGIVE 68
           +L D E KN  +E +E L+E +S + E
Sbjct: 333 LLEDAETKNVALEKVEELEEHVSHLTE 359


>gi|119120874 formin-like 3 isoform 1 [Homo sapiens]
          Length = 1027

 Score = 26.2 bits (56), Expect = 6.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)

Query: 42  ILSDGEGKNGTIELMEPLDEEISGIVE 68
           +L D E KN  +E +E L+E +S + E
Sbjct: 384 LLEDAETKNVALEKVEELEEHVSHLTE 410


>gi|104487002 protein tyrosine phosphatase, receptor type, D isoform
           5 precursor [Homo sapiens]
          Length = 1502

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 35  HPTGKMFILSDGEGKNGTIEL-MEPLDEEISGIVEVVGRVTAKATILC 81
           H   KM+  S       +++L  +P+ +E  G++ VVG V A   I+C
Sbjct: 821 HAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIIC 868


>gi|4506309 protein tyrosine phosphatase, receptor type, D isoform 1
            precursor [Homo sapiens]
          Length = 1912

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 35   HPTGKMFILSDGEGKNGTIEL-MEPLDEEISGIVEVVGRVTAKATILC 81
            H   KM+  S       +++L  +P+ +E  G++ VVG V A   I+C
Sbjct: 1235 HAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIIC 1282


>gi|18860890 protein tyrosine phosphatase, receptor type, D isoform 2
            precursor [Homo sapiens]
          Length = 1899

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 35   HPTGKMFILSDGEGKNGTIEL-MEPLDEEISGIVEVVGRVTAKATILC 81
            H   KM+  S       +++L  +P+ +E  G++ VVG V A   I+C
Sbjct: 1222 HAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIIC 1269


>gi|18860892 protein tyrosine phosphatase, receptor type, D isoform 3
            precursor [Homo sapiens]
          Length = 1903

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 35   HPTGKMFILSDGEGKNGTIEL-MEPLDEEISGIVEVVGRVTAKATILC 81
            H   KM+  S       +++L  +P+ +E  G++ VVG V A   I+C
Sbjct: 1226 HAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIIC 1273


>gi|18860894 protein tyrosine phosphatase, receptor type, D isoform
           4 precursor [Homo sapiens]
          Length = 1501

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 35  HPTGKMFILSDGEGKNGTIEL-MEPLDEEISGIVEVVGRVTAKATILC 81
           H   KM+  S       +++L  +P+ +E  G++ VVG V A   I+C
Sbjct: 824 HAESKMYATSPYSDPVVSMDLDPQPITDEEEGLIWVVGPVLAVVFIIC 871


>gi|167003762 hypothetical protein LOC645090 [Homo sapiens]
          Length = 633

 Score = 25.8 bits (55), Expect = 8.2
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 21  IDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEV 69
           ID  + F+ ++ K+H T  +  ++   GK   I+  + LD +   IV +
Sbjct: 270 IDISLLFIPQIMKLHKTMVIIEMTKANGKYWPIDNFDELDIKFKSIVGI 318


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.143    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,402,372
Number of Sequences: 37866
Number of extensions: 172399
Number of successful extensions: 292
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 14
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.