Search of human proteins with 4505193

Search of human proteins with 4505193

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505193 degenerative spermatocyte homolog 1, lipid
desaturase [Homo sapiens]
         (323 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|21614501 degenerative spermatocyte homolog 1, lipid desaturas...   686   0.0  
gi|4505193 degenerative spermatocyte homolog 1, lipid desaturase...   686   0.0  
gi|207113139 degenerative spermatocyte homolog 2, lipid desatura...   480   e-136
gi|109134327 PTD016 protein [Homo sapiens]                             29   6.5  
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho...    28   8.4  

>gi|21614501 degenerative spermatocyte homolog 1, lipid desaturase
           [Homo sapiens]
          Length = 323

 Score =  686 bits (1771), Expect = 0.0
 Identities = 323/323 (100%), Positives = 323/323 (100%)

Query: 1   MGSRVSREDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLIWIIIMMVLTQLGAFYI 60
           MGSRVSREDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLIWIIIMMVLTQLGAFYI
Sbjct: 1   MGSRVSREDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLIWIIIMMVLTQLGAFYI 60

Query: 61  VKDLDWKWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKAMWNRWFGMFANLPIGIPY 120
           VKDLDWKWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKAMWNRWFGMFANLPIGIPY
Sbjct: 61  VKDLDWKWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKAMWNRWFGMFANLPIGIPY 120

Query: 121 SISFKRYHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPK 180
           SISFKRYHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPK
Sbjct: 121 SISFKRYHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPK 180

Query: 181 PITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGH 240
           PITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGH
Sbjct: 181 PITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGH 240

Query: 241 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDF 300
           ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDF
Sbjct: 241 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDF 300

Query: 301 VMDDTISPYSRMKRHQKGEMVLE 323
           VMDDTISPYSRMKRHQKGEMVLE
Sbjct: 301 VMDDTISPYSRMKRHQKGEMVLE 323


>gi|4505193 degenerative spermatocyte homolog 1, lipid desaturase
           [Homo sapiens]
          Length = 323

 Score =  686 bits (1771), Expect = 0.0
 Identities = 323/323 (100%), Positives = 323/323 (100%)

Query: 1   MGSRVSREDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLIWIIIMMVLTQLGAFYI 60
           MGSRVSREDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLIWIIIMMVLTQLGAFYI
Sbjct: 1   MGSRVSREDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLIWIIIMMVLTQLGAFYI 60

Query: 61  VKDLDWKWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKAMWNRWFGMFANLPIGIPY 120
           VKDLDWKWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKAMWNRWFGMFANLPIGIPY
Sbjct: 61  VKDLDWKWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKAMWNRWFGMFANLPIGIPY 120

Query: 121 SISFKRYHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPK 180
           SISFKRYHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPK
Sbjct: 121 SISFKRYHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPK 180

Query: 181 PITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGH 240
           PITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGH
Sbjct: 181 PITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGH 240

Query: 241 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDF 300
           ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDF
Sbjct: 241 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDF 300

Query: 301 VMDDTISPYSRMKRHQKGEMVLE 323
           VMDDTISPYSRMKRHQKGEMVLE
Sbjct: 301 VMDDTISPYSRMKRHQKGEMVLE 323


>gi|207113139 degenerative spermatocyte homolog 2, lipid desaturase
           [Homo sapiens]
          Length = 323

 Score =  480 bits (1235), Expect = e-136
 Identities = 205/314 (65%), Positives = 264/314 (84%)

Query: 1   MGSRVSREDFEWVYTDQPHADRRREILAKYPEIKSLMKPDPNLIWIIIMMVLTQLGAFYI 60
           MG+  SR DFEWVYTDQPH  RR+EILAKYP IK+LM+PDP L W ++++VL Q+ A ++
Sbjct: 1   MGNSASRSDFEWVYTDQPHTQRRKEILAKYPAIKALMRPDPRLKWAVLVLVLVQMLACWL 60

Query: 61  VKDLDWKWVIFGAYAFGSCINHSMTLAIHEIAHNAAFGNCKAMWNRWFGMFANLPIGIPY 120
           V+ L W+W++F AYAFG C+NHS+TLAIH+I+HNAAFG  +A  NRW  +FANLP+G+PY
Sbjct: 61  VRGLAWRWLLFWAYAFGGCVNHSLTLAIHDISHNAAFGTGRAARNRWLAVFANLPVGVPY 120

Query: 121 SISFKRYHMDHHRYLGADGVDVDIPTDFEGWFFCTAFRKFIWVILQPLFYAFRPLFINPK 180
           + SFK+YH+DHHRYLG DG+DVD+PT  EGWFFCT  RK +W++LQP FY+ RPL ++PK
Sbjct: 121 AASFKKYHVDHHRYLGGDGLDVDVPTRLEGWFFCTPARKLLWLVLQPFFYSLRPLCVHPK 180

Query: 181 PITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLHPISGHFIAEHYMFLKGH 240
            +T +EV+NT+ Q+  D+ I+   G+K +VY+LA+S LGLGLHPISGHF+AEHYMFLKGH
Sbjct: 181 AVTRMEVLNTLVQLAADLAIFALWGLKPVVYLLASSFLGLGLHPISGHFVAEHYMFLKGH 240

Query: 241 ETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWIKVLYDF 300
           ETYSYYGPLN +TFNVGYH EHHDFP+IPG +LPLVRKIA EYYD+LP ++SW+KVL+DF
Sbjct: 241 ETYSYYGPLNWITFNVGYHVEHHDFPSIPGYNLPLVRKIAPEYYDHLPQHHSWVKVLWDF 300

Query: 301 VMDDTISPYSRMKR 314
           V +D++ PY+R+KR
Sbjct: 301 VFEDSLGPYARVKR 314


>gi|109134327 PTD016 protein [Homo sapiens]
          Length = 435

 Score = 28.9 bits (63), Expect = 6.5
 Identities = 28/141 (19%), Positives = 64/141 (45%), Gaps = 20/141 (14%)

Query: 166 QPLFYAFRPLFINPK--PITYLEVINTVAQVTFDILIYYFLGIKSLVYMLAASLLGLGLH 223
           Q L+Y+   +F+NP    +++ EV   V    F IL ++F+G+K L+ ++ + ++     
Sbjct: 226 QSLYYSL--IFLNPTLDHLSFWEVFWIVGITDF-ILKFFFMGLKCLILLVPSFIM----- 277

Query: 224 PISGHFIAEHYMFLKGHETYSYYGPLNLLTFNVGYHNEHHDFPNIPGKSLPLVRKI---- 279
                F ++ Y ++   E   YY     +     Y   + +F N+   SL ++  +    
Sbjct: 278 ----PFKSKGYWYMLLEELCQYYRTFVPIPVWFRYLISYGEFGNVTRWSLGILLALLYLI 333

Query: 280 --AAEYYDNLPHYNSWIKVLY 298
               E++ +L  +   +++ +
Sbjct: 334 LKLLEFFGHLRTFRQVLRIFF 354


>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
           sapiens]
          Length = 215

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 249 LNLLTFNVGYHNEHHDFPNIPGKSLPLVRKIAAEYYDNLPHYNSWI 294
           +NL+     +H+ HH  P  P    P +   A+  +   P++ SW+
Sbjct: 1   MNLVGSYAHHHHHHHPHPAHPMLHEPFLFGPASRCHQERPYFQSWL 46


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.328    0.144    0.476 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,534,403
Number of Sequences: 37866
Number of extensions: 543122
Number of successful extensions: 1123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 5
length of query: 323
length of database: 18,247,518
effective HSP length: 102
effective length of query: 221
effective length of database: 14,385,186
effective search space: 3179126106
effective search space used: 3179126106
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.