Search of human proteins with 4504009

Search of human proteins with 4504009

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4504009 alpha-galactosidase A precursor [Homo sapiens]
         (429 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4504009 alpha-galactosidase A precursor [Homo sapiens]             910   0.0  
gi|4557781 alpha-N-acetylgalactosaminidase precursor [Homo sapiens]   367   e-101
gi|118600967 shroom family member 4 [Homo sapiens]                     30   4.2  
gi|27312027 F-box only protein 16 [Homo sapiens]                       30   4.2  

>gi|4504009 alpha-galactosidase A precursor [Homo sapiens]
          Length = 429

 Score =  910 bits (2351), Expect = 0.0
 Identities = 429/429 (100%), Positives = 429/429 (100%)

Query: 1   MQLRNPELHLGCALALRFLALVSWDIPGARALDNGLARTPTMGWLHWERFMCNLDCQEEP 60
           MQLRNPELHLGCALALRFLALVSWDIPGARALDNGLARTPTMGWLHWERFMCNLDCQEEP
Sbjct: 1   MQLRNPELHLGCALALRFLALVSWDIPGARALDNGLARTPTMGWLHWERFMCNLDCQEEP 60

Query: 61  DSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQL 120
           DSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQL
Sbjct: 61  DSCISEKLFMEMAELMVSEGWKDAGYEYLCIDDCWMAPQRDSEGRLQADPQRFPHGIRQL 120

Query: 121 ANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENL 180
           ANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENL
Sbjct: 121 ANYVHSKGLKLGIYADVGNKTCAGFPGSFGYYDIDAQTFADWGVDLLKFDGCYCDSLENL 180

Query: 181 ADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIK 240
           ADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIK
Sbjct: 181 ADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQYCNHWRNFADIDDSWKSIK 240

Query: 241 SILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDL 300
           SILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDL
Sbjct: 241 SILDWTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSWNQQVTQMALWAIMAAPLFMSNDL 300

Query: 301 RHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIG 360
           RHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIG
Sbjct: 301 RHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDNFEVWERPLSGLAWAVAMINRQEIG 360

Query: 361 GPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQLENT 420
           GPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQLENT
Sbjct: 361 GPRSYTIAVASLGKGVACNPACFITQLLPVKRKLGFYEWTSRLRSHINPTGTVLLQLENT 420

Query: 421 MQMSLKDLL 429
           MQMSLKDLL
Sbjct: 421 MQMSLKDLL 429


>gi|4557781 alpha-N-acetylgalactosaminidase precursor [Homo sapiens]
          Length = 411

 Score =  367 bits (941), Expect = e-101
 Identities = 184/327 (56%), Positives = 228/327 (69%), Gaps = 5/327 (1%)

Query: 32  LDNGLARTPTMGWLHWERFMCNLDCQEEPDSCISEKLFMEMAELMVSEGWKDAGYEYLCI 91
           LDNGL +TP MGWL WERF CN++C E+P +CISE+LFMEMA+ M  +GW+D GY YL I
Sbjct: 18  LDNGLLQTPPMGWLAWERFRCNINCDEDPKNCISEQLFMEMADRMAQDGWRDMGYTYLNI 77

Query: 92  DDCWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAGFPGS-FG 150
           DDCW+   RD+ GRL  DP+RFPHGI  LA+YVHS GLKLGIYAD+GN TC G+PG+   
Sbjct: 78  DDCWIGG-RDASGRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLD 136

Query: 151 YYDIDAQTFADWGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYMWP 210
               DAQTFA+W VD+LK DGC+  + E  A GY  M+ ALN TGR I +SC WP Y   
Sbjct: 137 KVVQDAQTFAEWKVDMLKLDGCF-STPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGG 195

Query: 211 FQ-KPNYTEIRQYCNHWRNFADIDDSWKSIKSILDWTSFNQERIVDVAGPGGWNDPDMLV 269
              + NY+ +   CN WRN+ DI DSW S+ SIL+W   +Q+ +  VAGPG WNDPDML+
Sbjct: 196 LPPRVNYSLLADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDMLL 255

Query: 270 IGNFGLSWNQQVTQMALWAIMAAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGY 329
           IGNFGLS  Q   QMALW ++AAPL MS DLR IS Q   +LQ+  +I INQDPLG QG 
Sbjct: 256 IGNFGLSLEQSRAQMALWTVLAAPLLMSTDLRTISAQNMDILQNPLMIKINQDPLGIQGR 315

Query: 330 QL-RQGDNFEVWERPLSGLAWAVAMIN 355
           ++ ++    EV+ RPLS  A A+   +
Sbjct: 316 RIHKEKSLIEVYMRPLSNKASALVFFS 342


>gi|118600967 shroom family member 4 [Homo sapiens]
          Length = 1493

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 146 PGSFGYYDIDAQTFADWGVDLL-KFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEW 204
           PGSF Y  +  Q  A WG  L    + C   ++  + DG K       RTG  +V     
Sbjct: 5   PGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGT 64

Query: 205 PLY 207
           PLY
Sbjct: 65  PLY 67


>gi|27312027 F-box only protein 16 [Homo sapiens]
          Length = 292

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 1/32 (3%)

Query: 206 LYMWPFQKP-NYTEIRQYCNHWRNFADIDDSW 236
           LY++ F  P +     Q C HW+N A++D  W
Sbjct: 98  LYIFSFLDPRSLCRCAQVCWHWKNLAELDQLW 129


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.457 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,723,623
Number of Sequences: 37866
Number of extensions: 803993
Number of successful extensions: 1261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1255
Number of HSP's gapped (non-prelim): 4
length of query: 429
length of database: 18,247,518
effective HSP length: 105
effective length of query: 324
effective length of database: 14,271,588
effective search space: 4623994512
effective search space used: 4623994512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.