Search of human proteins with 4502369

Search of human proteins with 4502369

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4502369 gamma-butyrobetaine dioxygenase [Homo sapiens]
         (387 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4502369 gamma-butyrobetaine dioxygenase [Homo sapiens]             805   0.0  
gi|8922625 trimethyllysine hydroxylase, epsilon [Homo sapiens]        164   1e-40
gi|6912594 phosphatidylinositol transfer protein, beta [Homo sap...    29   6.3  
gi|239744583 PREDICTED: ovostatin 2 [Homo sapiens]                     29   8.2  
gi|110347429 mediator complex subunit 12 [Homo sapiens]                29   8.2  

>gi|4502369 gamma-butyrobetaine dioxygenase [Homo sapiens]
          Length = 387

 Score =  805 bits (2079), Expect = 0.0
 Identities = 387/387 (100%), Positives = 387/387 (100%)

Query: 1   MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDV 60
           MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDV
Sbjct: 1   MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDV 60

Query: 61  NIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSEL 120
           NIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSEL
Sbjct: 61  NIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGSEL 120

Query: 121 QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT 180
           QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT
Sbjct: 121 QLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHT 180

Query: 181 WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQK 240
           WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQK
Sbjct: 181 WQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQK 240

Query: 241 LKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIF 300
           LKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIF
Sbjct: 241 LKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDTIF 300

Query: 301 DVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISR 360
           DVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISR
Sbjct: 301 DVPVERVQPFYAALKEFVDLMNSKESKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISR 360

Query: 361 HLEGAYADWDVVMSRLRILRQRVENGN 387
           HLEGAYADWDVVMSRLRILRQRVENGN
Sbjct: 361 HLEGAYADWDVVMSRLRILRQRVENGN 387


>gi|8922625 trimethyllysine hydroxylase, epsilon [Homo sapiens]
          Length = 421

 Score =  164 bits (415), Expect = 1e-40
 Identities = 101/354 (28%), Positives = 163/354 (46%), Gaps = 16/354 (4%)

Query: 32  VWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFDRKKVYITWPDEHYSEFQADWL 91
           VWLRD+C  + CY      R L   ++D+ I  K +  D   ++ TWPD H +++  +WL
Sbjct: 74  VWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWL 133

Query: 92  KKRCFSKQARAKLQRELFFPECQYWGSEL----QLPTLDFEDVLRYDEHAYKWLSTLKKV 147
            K  +  Q +  +Q  +       W +E+    Q+P++D +  L  +E   K+L      
Sbjct: 134 VKNSYEGQKQKVIQPRIL------WNAEIYQQAQVPSVDCQSFLETNEGLKKFLQNFLLY 187

Query: 148 GIVRLTGASDKPGEVSKLGKRMGFLYLTFYGHTWQVQDKIDANNVAYTTGKLSFHTDYPA 207
           GI  +           KL +R+  +  T YG  W         + AYT   L  HTD   
Sbjct: 188 GIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALDRHTDTTY 247

Query: 208 LHHPPGVQLLHCIKQTVTGGDSEIVDGFNVCQKLKKNNPQAFQILSSTFVDFTDI-GVDY 266
              P G+Q+ HC+K   TGG + +VDGF   +++ +  P+ F++LS   +    I  V  
Sbjct: 248 FQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHEYIEDVGE 307

Query: 267 CDFSVQSKHKIIELDD-KGQVVRINFNNATRDTIFDVPVERVQPFYAALKEFVDLMNSKE 325
           C   +     ++ +     ++  I +NN  R  I  VP + V  +Y A +     +   E
Sbjct: 308 CHNHMIGIGPVLNIYPWNKELYLIRYNNYDRAVINTVPYDVVHRWYTAHRTLTIELRRPE 367

Query: 326 SKFTFKMNPGDVITFDNWRLLHGRRSYEAGTEISRHLEGAYADWDVVMSRLRIL 379
           ++F  K+ PG V+  DNWR+LHGR  +       R L G Y   D V++  R+L
Sbjct: 368 NEFWVKLKPGRVLFIDNWRVLHGRECFTG----YRQLCGCYLTRDDVLNTARLL 417


>gi|6912594 phosphatidylinositol transfer protein, beta [Homo
           sapiens]
          Length = 271

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 125 LDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASD 157
           L  ED+ R ++   K L T++K G VR T A+D
Sbjct: 238 LTMEDIRRMEDETQKELETMRKRGSVRGTSAAD 270


>gi|239744583 PREDICTED: ovostatin 2 [Homo sapiens]
          Length = 1394

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 35/129 (27%)

Query: 116  WGSELQLPTLD-FEDVLRYDEHAYK----WLSTLKKVGIVRLTGASDKPGEVSKLGKRMG 170
            W S L   TL+  +  +  DE+  K    WLS+ +K      +G     G++        
Sbjct: 1025 WLSALTFKTLERMKKFVFIDENVQKQTLIWLSSQQKT-----SGCFKNDGQL-------- 1071

Query: 171  FLYLTFYGHTWQVQDKIDANNVAYTTG---KLSFHTDYPALHHPPGVQLLHCIKQTVTGG 227
                  + H W+  D+ D +  AY  G   +   ++ +PAL +      L C++  +   
Sbjct: 1072 ------FNHAWEGGDEEDISLTAYVVGMFFEAGLNSTFPALRN-----ALFCLEAAL--- 1117

Query: 228  DSEIVDGFN 236
            DS + +G+N
Sbjct: 1118 DSGVTNGYN 1126


>gi|110347429 mediator complex subunit 12 [Homo sapiens]
          Length = 2177

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)

Query: 27   SLYPAVWLRDNCPCSDCYLDSAKARKLLVEALDVNIGIKGLIFD 70
            SLY  V    N    D YLD  K ++L+ EAL + + + G +FD
Sbjct: 1502 SLYSQVHQIVNNWRDDQYLDDCKPKQLMHEALKLRLNLVGGMFD 1545


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,610,907
Number of Sequences: 37866
Number of extensions: 615266
Number of successful extensions: 1328
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 6
length of query: 387
length of database: 18,247,518
effective HSP length: 104
effective length of query: 283
effective length of database: 14,309,454
effective search space: 4049575482
effective search space used: 4049575482
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.