Search of human proteins with 12408665

Search of human proteins with 12408665

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|12408665 T-lymphocyte maturation-associated protein isoform
d [Homo sapiens]
         (55 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|12408665 T-lymphocyte maturation-associated protein isoform d...   111   1e-25
gi|12408663 T-lymphocyte maturation-associated protein isoform c...    91   2e-19
gi|12408661 T-lymphocyte maturation-associated protein isoform b...    77   2e-15
gi|4505091 T-lymphocyte maturation-associated protein isoform a ...    71   2e-13
gi|13162283 mal, T-cell differentiation protein-like [Homo sapiens]    36   0.006

>gi|12408665 T-lymphocyte maturation-associated protein isoform d
          [Homo sapiens]
          Length = 55

 Score =  111 bits (277), Expect = 1e-25
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFVFSYIATLLYVVHAVFSLIRWKSS 55
          MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFVFSYIATLLYVVHAVFSLIRWKSS
Sbjct: 1  MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFVFSYIATLLYVVHAVFSLIRWKSS 55


>gi|12408663 T-lymphocyte maturation-associated protein isoform c
          [Homo sapiens]
          Length = 97

 Score = 90.9 bits (224), Expect = 2e-19
 Identities = 55/97 (56%), Positives = 55/97 (56%), Gaps = 42/97 (43%)

Query: 1  MAPAAATGGSTLPSGFSVFTTLPDLLFIFEF----------------------------- 31
          MAPAAATGGSTLPSGFSVFTTLPDLLFIFEF                             
Sbjct: 1  MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFDAAYHCTAALFYLSASVLEALATITMQDG 60

Query: 32 -------------VFSYIATLLYVVHAVFSLIRWKSS 55
                       VFSYIATLLYVVHAVFSLIRWKSS
Sbjct: 61 FTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS 97


>gi|12408661 T-lymphocyte maturation-associated protein isoform b
           [Homo sapiens]
          Length = 111

 Score = 77.4 bits (189), Expect = 2e-15
 Identities = 52/111 (46%), Positives = 54/111 (48%), Gaps = 56/111 (50%)

Query: 1   MAPAAATGGSTLPSGFSVFTTLPDLLFIFEF----------------------------V 32
           MAPAAATGGSTLPSGFSVFTTLPDLLFIFEF                            V
Sbjct: 1   MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVPWPLVQGWVMFVSV 60

Query: 33  FSYIAT----------------------------LLYVVHAVFSLIRWKSS 55
           F ++AT                            LLYVVHAVFSLIRWKSS
Sbjct: 61  FCFVATTTLIILYIIGAHGGETSWVTLVFSYIATLLYVVHAVFSLIRWKSS 111


>gi|4505091 T-lymphocyte maturation-associated protein isoform a
          [Homo sapiens]
          Length = 153

 Score = 70.9 bits (172), Expect = 2e-13
 Identities = 36/52 (69%), Positives = 40/52 (76%), Gaps = 4/52 (7%)

Query: 1  MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFVFSYIATLLYVVHAVFSLIRW 52
          MAPAAATGGSTLPSGFSVFTTLPDLLFIFEF+F  +  +L       SL+ W
Sbjct: 1  MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWIL----VASSLVPW 48



 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 24/24 (100%), Positives = 24/24 (100%)

Query: 32  VFSYIATLLYVVHAVFSLIRWKSS 55
           VFSYIATLLYVVHAVFSLIRWKSS
Sbjct: 130 VFSYIATLLYVVHAVFSLIRWKSS 153


>gi|13162283 mal, T-cell differentiation protein-like [Homo
          sapiens]
          Length = 153

 Score = 36.2 bits (82), Expect = 0.006
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 3  PAAATGGSTLPSGFSVFTTLPDLLFIFEFVFSYIA-TLLYVVHAVFSLIR 51
          PA +   S +PSG ++F T+P   F+ E +F ++  T++   H V+ L++
Sbjct: 7  PATSYAPSDVPSGVALFLTIPFAFFLPELIFGFLVWTMVAATHIVYPLLQ 56


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.330    0.139    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,954,868
Number of Sequences: 37866
Number of extensions: 54552
Number of successful extensions: 239
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 9
length of query: 55
length of database: 18,247,518
effective HSP length: 29
effective length of query: 26
effective length of database: 17,149,404
effective search space: 445884504
effective search space used: 445884504
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.