Search of human proteins with 38454326

Search of human proteins with 38454326

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|38454326 CD38 antigen [Homo sapiens]
         (300 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|38454326 CD38 antigen [Homo sapiens]                               631   0.0  
gi|168229159 bone marrow stromal cell antigen 1 precursor [Homo ...   188   4e-48
gi|4757876 bone marrow stromal cell antigen 2 [Homo sapiens]           29   4.4  
gi|109826564 neurofibromin isoform 1 [Homo sapiens]                    28   7.6  
gi|4557793 neurofibromin isoform 2 [Homo sapiens]                      28   7.6  
gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]        28   7.6  
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...    28   9.9  

>gi|38454326 CD38 antigen [Homo sapiens]
          Length = 300

 Score =  631 bits (1627), Expect = 0.0
 Identities = 300/300 (100%), Positives = 300/300 (100%)

Query: 1   MANCEFSPVSGDKPCCRLSRRAQLCLGVSILVLILVVVLAVVVPRWRQQWSGPGTTKRFP 60
           MANCEFSPVSGDKPCCRLSRRAQLCLGVSILVLILVVVLAVVVPRWRQQWSGPGTTKRFP
Sbjct: 1   MANCEFSPVSGDKPCCRLSRRAQLCLGVSILVLILVVVLAVVVPRWRQQWSGPGTTKRFP 60

Query: 61  ETVLARCVKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCNITEEDYQPLMKLGTQTVPCN 120
           ETVLARCVKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCNITEEDYQPLMKLGTQTVPCN
Sbjct: 61  ETVLARCVKYTEIHPEMRHVDCQSVWDAFKGAFISKHPCNITEEDYQPLMKLGTQTVPCN 120

Query: 121 KILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKDC 180
           KILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKDC
Sbjct: 121 KILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKDC 180

Query: 181 SNNPVSVFWKTVSRRFAEAACDVVHVMLNGSRSKIFDKNSTFGSVEVHNLQPEKVQTLEA 240
           SNNPVSVFWKTVSRRFAEAACDVVHVMLNGSRSKIFDKNSTFGSVEVHNLQPEKVQTLEA
Sbjct: 181 SNNPVSVFWKTVSRRFAEAACDVVHVMLNGSRSKIFDKNSTFGSVEVHNLQPEKVQTLEA 240

Query: 241 WVIHGGREDSRDLCQDPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDSSCTSEI 300
           WVIHGGREDSRDLCQDPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDSSCTSEI
Sbjct: 241 WVIHGGREDSRDLCQDPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDSSCTSEI 300


>gi|168229159 bone marrow stromal cell antigen 1 precursor [Homo
           sapiens]
          Length = 318

 Score =  188 bits (478), Expect = 4e-48
 Identities = 103/283 (36%), Positives = 151/283 (53%), Gaps = 10/283 (3%)

Query: 16  CRLSRRAQLCLGVSILVLILVVVLAVVVPRWRQQWSGPGTTKRFPETVLARCVKYTEI-H 74
           C  SR  QL L + +L+L+L    A      R +W G GT+    +  L RC +Y  +  
Sbjct: 6   CAASRLLQLLLQLLLLLLLLAAGGA------RARWRGEGTSAHLRDIFLGRCAEYRALLS 59

Query: 75  PEMRHVDCQSVWDAFKGAFISKHPCNITEEDYQPLMKLGTQTVPCNKILLWSRIKDLAHQ 134
           PE R+ +C ++W+AFK A + K PC++   DY   + L   ++P +K L W     L + 
Sbjct: 60  PEQRNKNCTAIWEAFKVA-LDKDPCSVLPSDYDLFINLSRHSIPRDKSLFWENSHLLVNS 118

Query: 135 FTQVQRDMFTLEDTLLGYLADDLTWCGEFNTSKINYQSCPDWRKDCSNNPVSVFWKTVSR 194
           F    R    L D L G +AD L+WC + N S ++YQSCP   +DC NNPV  FWK  S 
Sbjct: 119 FADNTRRFMPLSDVLYGRVADFLSWCRQKNDSGLDYQSCPT-SEDCENNPVDSFWKRASI 177

Query: 195 RFAEAACDVVHVMLNGSR-SKIFDKNSTFGSVEVHNLQPEKVQTLEAWVIHGGREDSRDL 253
           ++++ +  V+HVMLNGS  +  +     F   E+ NLQ EK+  +E WV+H     + + 
Sbjct: 178 QYSKDSSGVIHVMLNGSEPTGAYPIKGFFADYEIPNLQKEKITRIEIWVMHEIGGPNVES 237

Query: 254 CQDPTIKELESIISKRNIQFSCKNIYRPDKFLQCVKNPEDSSC 296
           C + ++K LE  +     Q+SC N YRP K LQCV +     C
Sbjct: 238 CGEGSMKVLEKRLKDMGFQYSCINDYRPVKLLQCVDHSTHPDC 280


>gi|4757876 bone marrow stromal cell antigen 2 [Homo sapiens]
          Length = 180

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 7/38 (18%)

Query: 4  CEFSPVSGDKPCCRLSRRAQLCLGVSILVLILVVVLAV 41
          C      GDK C       +L LG+ ILVL+++V+L V
Sbjct: 9  CRVPMEDGDKRC-------KLLLGIGILVLLIIVILGV 39


>gi|109826564 neurofibromin isoform 1 [Homo sapiens]
          Length = 2839

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 100  NITEEDYQPLMKLGTQTVPCNKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTW 159
            N TE   + L +   +T+  N +     + ++ H   Q++  +  L + ++    DDL++
Sbjct: 974  NHTEGSSEHLGQASIETMMLNLVRYVRVLGNMVHAI-QIKTKLCQLVEVMMAR-RDDLSF 1031

Query: 160  CGEFNTSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFAEAACDVVHVMLNG 210
            C E        +   DW    SN       K ++R   +A+ + V  +L G
Sbjct: 1032 CQEMKFRNKMVEYLTDWVMGTSNQAADDDVKCLTRDLDQASMEAVVSLLAG 1082


>gi|4557793 neurofibromin isoform 2 [Homo sapiens]
          Length = 2818

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 24/111 (21%), Positives = 47/111 (42%), Gaps = 2/111 (1%)

Query: 100  NITEEDYQPLMKLGTQTVPCNKILLWSRIKDLAHQFTQVQRDMFTLEDTLLGYLADDLTW 159
            N TE   + L +   +T+  N +     + ++ H   Q++  +  L + ++    DDL++
Sbjct: 974  NHTEGSSEHLGQASIETMMLNLVRYVRVLGNMVHAI-QIKTKLCQLVEVMMAR-RDDLSF 1031

Query: 160  CGEFNTSKINYQSCPDWRKDCSNNPVSVFWKTVSRRFAEAACDVVHVMLNG 210
            C E        +   DW    SN       K ++R   +A+ + V  +L G
Sbjct: 1032 CQEMKFRNKMVEYLTDWVMGTSNQAADDDVKCLTRDLDQASMEAVVSLLAG 1082


>gi|5730112 vesicle-associated membrane protein 5 [Homo sapiens]
          Length = 116

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 16  CRLSRRAQLCLG---VSILVLILVVVLAVVVPRWRQQWSGPGT 55
           C  + R ++C+G   V +L++IL+V+L V +P+     S P T
Sbjct: 63  CWENIRYRICVGLVVVGVLLIILIVLLVVFLPQSSDSSSAPRT 105


>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
            isoform 1 [Homo sapiens]
          Length = 2477

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 212  RSKIFDKNSTFGSVEVHNLQPEKVQTLEAWVIHGGREDSRDLCQDPTIKELESIISK 268
            ++++ +K S  G  +        V  +EAW+    +  S +  +DPT  +L  ++SK
Sbjct: 1537 KAQMIEKRSKLGESQTLQQFSRDVDEIEAWISEKLQTASDESYKDPTNIQLSKLLSK 1593


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,282,566
Number of Sequences: 37866
Number of extensions: 514095
Number of successful extensions: 1104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1096
Number of HSP's gapped (non-prelim): 7
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.