Search of human proteins with 31542298

Search of human proteins with 31542298

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31542298 hypothetical protein LOC51016 [Homo sapiens]
         (208 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31542298 hypothetical protein LOC51016 [Homo sapiens]              434   e-122
gi|5174615 COX4 neighbor isoform 1 [Homo sapiens]                     169   2e-42
gi|214010229 COX4 neighbor isoform 2 [Homo sapiens]                   106   1e-23
gi|4505163 mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylg...    29   3.2  

>gi|31542298 hypothetical protein LOC51016 [Homo sapiens]
          Length = 208

 Score =  434 bits (1115), Expect = e-122
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MGEVEISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVML 60
           MGEVEISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVML
Sbjct: 1   MGEVEISALAYVKMCLHAARYPHAAVNGLFLAPAPRSGECLCLTDCVPLFHSHLALSVML 60

Query: 61  EVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPDAVLIMLDNQK 120
           EVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPDAVLIMLDNQK
Sbjct: 61  EVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFPDAVLIMLDNQK 120

Query: 121 LVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQHLVDFDCHLD 180
           LVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQHLVDFDCHLD
Sbjct: 121 LVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAHQHLVDFDCHLD 180

Query: 181 DIRQDWTNQRLNTQITQWVGPTNGNGNA 208
           DIRQDWTNQRLNTQITQWVGPTNGNGNA
Sbjct: 181 DIRQDWTNQRLNTQITQWVGPTNGNGNA 208


>gi|5174615 COX4 neighbor isoform 1 [Homo sapiens]
          Length = 210

 Score =  169 bits (427), Expect = 2e-42
 Identities = 89/206 (43%), Positives = 117/206 (56%), Gaps = 11/206 (5%)

Query: 1   MGEVEISALAYVKMCLHAARYPHAAVNGLFLAPAPR-----------SGECLCLTDCVPL 49
           M  V+++  AY KM LH A+YPH AVNGL +A   +                   DC+PL
Sbjct: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60

Query: 50  FHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFP 109
           FH  LAL+ MLEVAL  +D W      V+AGYY AN  V D SP  +A K+A RIAE F 
Sbjct: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120

Query: 110 DAVLIMLDNQKLVPQPRVPPVIVLENQGLRWVPKDKNLVMWRDWEESRQMVGALLEDRAH 169
           D  LIM+DN K       P + V E+   RW  +D +     DW E++++  +LL+ R++
Sbjct: 121 DTALIMVDNTKFTMDCVAPTIHVYEHHENRWRCRDPHHDYCEDWPEAQRISASLLDSRSY 180

Query: 170 QHLVDFDCHLDDIRQDWTNQRLNTQI 195
           + LVDFD HLDDIR DWTN  +N  +
Sbjct: 181 ETLVDFDNHLDDIRNDWTNPEINKAV 206


>gi|214010229 COX4 neighbor isoform 2 [Homo sapiens]
          Length = 126

 Score =  106 bits (265), Expect = 1e-23
 Identities = 58/126 (46%), Positives = 70/126 (55%), Gaps = 11/126 (8%)

Query: 1   MGEVEISALAYVKMCLHAARYPHAAVNGLFLAPAPR-----------SGECLCLTDCVPL 49
           M  V+++  AY KM LH A+YPH AVNGL +A   +                   DC+PL
Sbjct: 1   MPGVKLTTQAYCKMVLHGAKYPHCAVNGLLVAEKQKPRKEHLPLGGPGAHHTLFVDCIPL 60

Query: 50  FHSHLALSVMLEVALNQVDVWGAQAGLVVAGYYHANAAVNDQSPGPLALKIAGRIAEFFP 109
           FH  LAL+ MLEVAL  +D W      V+AGYY AN  V D SP  +A K+A RIAE F 
Sbjct: 61  FHGTLALAPMLEVALTLIDSWCKDHSYVIAGYYQANERVKDASPNQVAEKVASRIAEGFS 120

Query: 110 DAVLIM 115
           D  LIM
Sbjct: 121 DTALIM 126


>gi|4505163 mannosyl (alpha-1,6-)-glycoprotein
           beta-1,2-N-acetylglucosaminyltransferase [Homo sapiens]
          Length = 447

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 151 RDWEESRQMVGALLEDRAHQHLV---DFDCHLDDIRQDWTNQRL 191
           + W+ +   +G  L   A+Q L+   D  C  DD   DWT Q L
Sbjct: 310 KTWKSTEHNMGLALTRNAYQKLIECTDTFCTYDDYNWDWTLQYL 353


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.440 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,539,491
Number of Sequences: 37866
Number of extensions: 365673
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 640
Number of HSP's gapped (non-prelim): 4
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.