Search of human proteins with 30350214

Search of human proteins with 30350214

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|30350214 AP20 region protein isoform E [Homo sapiens]
         (119 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|30350214 AP20 region protein isoform E [Homo sapiens]              242   4e-65
gi|153251878 AP20 region protein isoform B [Homo sapiens]             160   2e-40
gi|51873067 quiescin Q6 sulfhydryl oxidase 1 isoform b [Homo sap...    29   0.94 
gi|13325075 quiescin Q6 sulfhydryl oxidase 1 isoform a [Homo sap...    29   0.94 
gi|4507347 TBP-associated factor 2 [Homo sapiens]                      27   3.6  

>gi|30350214 AP20 region protein isoform E [Homo sapiens]
          Length = 119

 Score =  242 bits (618), Expect = 4e-65
 Identities = 119/119 (100%), Positives = 119/119 (100%)

Query: 1   MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG 60
           MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG
Sbjct: 1   MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG 60

Query: 61  SAQHFNIFPLDLWTQGDCMLVSLAKNKVNVFGAIINMAASVSGVIGGLKFSRTYYVKGI 119
           SAQHFNIFPLDLWTQGDCMLVSLAKNKVNVFGAIINMAASVSGVIGGLKFSRTYYVKGI
Sbjct: 61  SAQHFNIFPLDLWTQGDCMLVSLAKNKVNVFGAIINMAASVSGVIGGLKFSRTYYVKGI 119


>gi|153251878 AP20 region protein isoform B [Homo sapiens]
          Length = 170

 Score =  160 bits (405), Expect = 2e-40
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 1  MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG 60
          MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG
Sbjct: 1  MKTMATRKRCKLSRTGPEFENVIKRLLCARTFHTRIGGDLTHGIINRGRRANAEQMGLQG 60

Query: 61 SAQHFNIFPLDLWTQG 76
          SAQHFNIFPLDLWTQG
Sbjct: 61 SAQHFNIFPLDLWTQG 76


>gi|51873067 quiescin Q6 sulfhydryl oxidase 1 isoform b [Homo
           sapiens]
          Length = 604

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 56  MGLQGSAQHFNIFPLDLWTQGDCMLVSLAKNKVN 89
           +G QGS  HF  FP  LW     + V  A+  V+
Sbjct: 391 IGCQGSEPHFRGFPCSLWVLFHFLTVQAARQNVD 424


>gi|13325075 quiescin Q6 sulfhydryl oxidase 1 isoform a [Homo
           sapiens]
          Length = 747

 Score = 28.9 bits (63), Expect = 0.94
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 56  MGLQGSAQHFNIFPLDLWTQGDCMLVSLAKNKVN 89
           +G QGS  HF  FP  LW     + V  A+  V+
Sbjct: 391 IGCQGSEPHFRGFPCSLWVLFHFLTVQAARQNVD 424


>gi|4507347 TBP-associated factor 2 [Homo sapiens]
          Length = 1199

 Score = 26.9 bits (58), Expect = 3.6
 Identities = 17/80 (21%), Positives = 38/80 (47%), Gaps = 9/80 (11%)

Query: 32  FHTRIGGDLTHGIINRGRRANAEQMGLQGSAQHFNIFPLDLWTQGDC---MLVSLAKNKV 88
           +  + GG L H I   G+  +     L  S +H +    + +T   C   +++ L +N++
Sbjct: 405 YELKTGGVLLHPIFGGGKEKDNPASHLHFSIKHPHTLSWEYYTMFQCKAHLVMRLIENRI 464

Query: 89  N------VFGAIINMAASVS 102
           +      VF  ++++A++ S
Sbjct: 465 SMEFMLQVFNKLLSLASTAS 484


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.325    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,849,212
Number of Sequences: 37866
Number of extensions: 129741
Number of successful extensions: 264
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 260
Number of HSP's gapped (non-prelim): 5
length of query: 119
length of database: 18,247,518
effective HSP length: 88
effective length of query: 31
effective length of database: 14,915,310
effective search space: 462374610
effective search space used: 462374610
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.