Guide to the Human Genome
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Name: IFI30 Sequence: fasta or formatted (250aa) NCBI GI: 29150261
Description:

interferon, gamma-inducible protein 30 preproprotein

Referenced in:

Interferon
Lysosomes and Related Organelles

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         15           2
 C cysteine            4.4         11           1
 D aspartate           4.0         10           1
 E glutamate           7.2         18           3
 F phenylalanine       4.0         10           2
 G glycine             5.6         14           2
 H histidine           1.2          3           1
 I isoleucine          1.6          4           1
 K lysine              4.0         10           2
 L leucine            16.4         41           5
 M methionine          3.6          9           1
 N asparagine          4.4         11           1
 P proline             8.0         20           2
 Q glutamine           5.2         13           1
 R arginine            3.2          8           1
 S serine              4.4         11           2
 T threonine           5.2         13           1
 V valine              7.2         18           1
 W tryptophan          1.2          3           1
 Y tyrosine            3.2          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   interferon, gamma-inducible protein 30 preproprotein... 
BTNL2                 0.010   butyrophilin-like 2 
RAB3GAP1              0.010   RAB3 GTPase-activating protein 
AP2M1                 0.010   adaptor-related protein complex 2, mu 1 subunit isof...
ZNF517                0.010   zinc finger protein 517 
AP2M1                 0.008   adaptor-related protein complex 2, mu 1 subunit isof...
ZNF853                0.008   zinc finger protein 853 
FAM5C                 0.008   family with sequence similarity 5, member C 
FGFRL1                0.006   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.006   fibroblast growth factor receptor-like 1 precursor [...
FGFRL1                0.006   fibroblast growth factor receptor-like 1 precursor [...
ISG15                 0.006   ISG15 ubiquitin-like modifier 
KBTBD11               0.006   kelch repeat and BTB (POZ) domain containing 11 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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