Search of human proteins with 28976154

Search of human proteins with 28976154

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28976154 trafficking protein particle complex 6B isoform 2
[Homo sapiens]
         (130 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28976154 trafficking protein particle complex 6B isoform 2 [H...   263   3e-71
gi|118600991 trafficking protein particle complex 6B isoform 1 [...   248   1e-66
gi|13129120 trafficking protein particle complex 6A [Homo sapiens]    130   4e-31
gi|7656926 trafficking protein particle complex 3 [Homo sapiens]       28   2.7  
gi|9257190 adducin 2 isoform e [Homo sapiens]                          27   3.5  
gi|89276787 adducin 2 isoform b [Homo sapiens]                         27   3.5  
gi|9257192 adducin 2 isoform a [Homo sapiens]                          27   3.5  
gi|9951927 adducin 3 (gamma) isoform b [Homo sapiens]                  27   3.5  
gi|62912453 adducin 3 (gamma) isoform b [Homo sapiens]                 27   3.5  
gi|9943848 adducin 3 (gamma) isoform a [Homo sapiens]                  27   3.5  

>gi|28976154 trafficking protein particle complex 6B isoform 2 [Homo
           sapiens]
          Length = 130

 Score =  263 bits (672), Expect = 3e-71
 Identities = 130/130 (100%), Positives = 130/130 (100%)

Query: 1   MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKD 60
           MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKD
Sbjct: 1   MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKD 60

Query: 61  ELDIMKFICKDFWTTVFKKQIDNLRTNHQYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPA 120
           ELDIMKFICKDFWTTVFKKQIDNLRTNHQYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPA
Sbjct: 61  ELDIMKFICKDFWTTVFKKQIDNLRTNHQYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPA 120

Query: 121 CKFQVMIQKL 130
           CKFQVMIQKL
Sbjct: 121 CKFQVMIQKL 130


>gi|118600991 trafficking protein particle complex 6B isoform 1
           [Homo sapiens]
          Length = 158

 Score =  248 bits (633), Expect = 1e-66
 Identities = 130/158 (82%), Positives = 130/158 (82%), Gaps = 28/158 (17%)

Query: 1   MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKD 60
           MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKD
Sbjct: 1   MADEALFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKD 60

Query: 61  ELDIMKFICKDFWTTVFKKQIDNLRTNHQ----------------------------YLA 92
           ELDIMKFICKDFWTTVFKKQIDNLRTNHQ                            YLA
Sbjct: 61  ELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMSAGKQYLEHASKYLA 120

Query: 93  FTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL 130
           FTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL
Sbjct: 121 FTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQKL 158


>gi|13129120 trafficking protein particle complex 6A [Homo sapiens]
          Length = 173

 Score =  130 bits (326), Expect = 4e-31
 Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 43/172 (25%)

Query: 1   MADEALFLLLHNEMVSGVY--------------KSAEQGEVENGRC-ITKLENMGFRVGQ 45
           MAD  LF  LH EMV+ ++              +  E G  +  +  ++ LE MGFRVGQ
Sbjct: 1   MADTVLFEFLHTEMVAELWAHDPDPGPGVSAGLRGEEAGATKGQKMSLSVLEGMGFRVGQ 60

Query: 46  GLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQ---------------- 89
            L ER  ++T  F++ELD++KF+CKD W  VF+KQ+D+LRTNHQ                
Sbjct: 61  ALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPM 120

Query: 90  ------------YLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQK 129
                       +LAFTCGL+RG L  LGI+S+VTA V+++P CKFQV+I K
Sbjct: 121 ASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVIPK 172


>gi|7656926 trafficking protein particle complex 3 [Homo sapiens]
          Length = 180

 Score = 27.7 bits (60), Expect = 2.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 6  LFLLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRVGQGLIERF 51
          LF L +  +V+ + K  E  E  N     +L+ MGF +G  LIE F
Sbjct: 18 LFTLTYGALVTQLCKDYENDEDVN----KQLDKMGFNIGVRLIEDF 59


>gi|9257190 adducin 2 isoform e [Homo sapiens]
          Length = 643

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 17  GVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDI 64
           G  + +  GE E    +  L+N+G+R G      F ++  + K E++I
Sbjct: 353 GPMQKSRLGEHEFEALMRMLDNLGYRTGYTYRHPFVQEKTKHKSEVEI 400


>gi|89276787 adducin 2 isoform b [Homo sapiens]
          Length = 559

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 17  GVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDI 64
           G  + +  GE E    +  L+N+G+R G      F ++  + K E++I
Sbjct: 353 GPMQKSRLGEHEFEALMRMLDNLGYRTGYTYRHPFVQEKTKHKSEVEI 400


>gi|9257192 adducin 2 isoform a [Homo sapiens]
          Length = 726

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 13/48 (27%), Positives = 24/48 (50%)

Query: 17  GVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDI 64
           G  + +  GE E    +  L+N+G+R G      F ++  + K E++I
Sbjct: 353 GPMQKSRLGEHEFEALMRMLDNLGYRTGYTYRHPFVQEKTKHKSEVEI 400


>gi|9951927 adducin 3 (gamma) isoform b [Homo sapiens]
          Length = 674

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 17  GVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDI 64
           G ++  + GE+E    +  L+N+G+R G        ++  R K +++I
Sbjct: 359 GSHQKWKVGEIEFEGLMRTLDNLGYRTGYAYRHPLIREKPRHKSDVEI 406


>gi|62912453 adducin 3 (gamma) isoform b [Homo sapiens]
          Length = 674

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 17  GVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDI 64
           G ++  + GE+E    +  L+N+G+R G        ++  R K +++I
Sbjct: 359 GSHQKWKVGEIEFEGLMRTLDNLGYRTGYAYRHPLIREKPRHKSDVEI 406


>gi|9943848 adducin 3 (gamma) isoform a [Homo sapiens]
          Length = 706

 Score = 27.3 bits (59), Expect = 3.5
 Identities = 12/48 (25%), Positives = 25/48 (52%)

Query: 17  GVYKSAEQGEVENGRCITKLENMGFRVGQGLIERFTKDTARFKDELDI 64
           G ++  + GE+E    +  L+N+G+R G        ++  R K +++I
Sbjct: 359 GSHQKWKVGEIEFEGLMRTLDNLGYRTGYAYRHPLIREKPRHKSDVEI 406


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,075,243
Number of Sequences: 37866
Number of extensions: 147955
Number of successful extensions: 379
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 12
length of query: 130
length of database: 18,247,518
effective HSP length: 90
effective length of query: 40
effective length of database: 14,839,578
effective search space: 593583120
effective search space used: 593583120
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.