Search of human proteins with 24308273

Search of human proteins with 24308273

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|24308273 hypothetical protein LOC58527 [Homo sapiens]
         (81 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24308273 hypothetical protein LOC58527 [Homo sapiens]              162   5e-41
gi|21040251 actin-binding Rho activating protein [Homo sapiens]        43   5e-05

>gi|24308273 hypothetical protein LOC58527 [Homo sapiens]
          Length = 81

 Score =  162 bits (410), Expect = 5e-41
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 1  MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIVT 60
          MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIVT
Sbjct: 1  MNVDHEVNLLVEEIHRLGSKNADGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIVT 60

Query: 61 YPGELLLQGVHDDVDIILLQD 81
          YPGELLLQGVHDDVDIILLQD
Sbjct: 61 YPGELLLQGVHDDVDIILLQD 81


>gi|21040251 actin-binding Rho activating protein [Homo sapiens]
          Length = 381

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 2/58 (3%)

Query: 23  DGKLSVKFGVLFRDDKCANLFEALVGTLKAAKRRKIVTYPGELLLQGVHDDVDIILLQ 80
           DGK+ V FG LF  D+   + + +VG L  A++  +V + GE+L QG  D V I LL+
Sbjct: 326 DGKIQVTFGDLF--DRYVRISDKVVGILMRARKHGLVDFEGEMLWQGRDDHVVITLLK 381


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.142    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,633,695
Number of Sequences: 37866
Number of extensions: 79500
Number of successful extensions: 195
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 2
length of query: 81
length of database: 18,247,518
effective HSP length: 53
effective length of query: 28
effective length of database: 16,240,620
effective search space: 454737360
effective search space used: 454737360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.