Search of human proteins with 239757134

Search of human proteins with 239757134

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239757134 PREDICTED: hypothetical protein [Homo sapiens]
         (171 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757134 PREDICTED: hypothetical protein [Homo sapiens]           351   2e-97
gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]                   28   5.0  
gi|31543174 transmembrane protein 86B [Homo sapiens]                   28   5.0  
gi|190341095 transmembrane protein 63C [Homo sapiens]                  27   8.6  

>gi|239757134 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 171

 Score =  351 bits (901), Expect = 2e-97
 Identities = 171/171 (100%), Positives = 171/171 (100%)

Query: 1   MSIPRDRGGTGILTHCSLQLGQLLVDLLLLRFLWKLTHCSLQPGQLLVDLLLLRFLWKLT 60
           MSIPRDRGGTGILTHCSLQLGQLLVDLLLLRFLWKLTHCSLQPGQLLVDLLLLRFLWKLT
Sbjct: 1   MSIPRDRGGTGILTHCSLQLGQLLVDLLLLRFLWKLTHCSLQPGQLLVDLLLLRFLWKLT 60

Query: 61  HCSLQPGQLLVDLLLLRFLWKLTHCSLQPSQLLVDLLHLRFLWKLTHCSLQPGQLLVDLL 120
           HCSLQPGQLLVDLLLLRFLWKLTHCSLQPSQLLVDLLHLRFLWKLTHCSLQPGQLLVDLL
Sbjct: 61  HCSLQPGQLLVDLLLLRFLWKLTHCSLQPSQLLVDLLHLRFLWKLTHCSLQPGQLLVDLL 120

Query: 121 QLRFLWKLTHCSLQPGQLLVDLLQLRFLWKLTHCSLQLGQLLVDLLQLGFL 171
           QLRFLWKLTHCSLQPGQLLVDLLQLRFLWKLTHCSLQLGQLLVDLLQLGFL
Sbjct: 121 QLRFLWKLTHCSLQPGQLLVDLLQLRFLWKLTHCSLQLGQLLVDLLQLGFL 171


>gi|57529246 ubiquitin thioesterase 19 [Homo sapiens]
          Length = 1318

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)

Query: 74  LLLRFLWKLTHCSLQPSQL 92
           +LLR LWK TH + QPS+L
Sbjct: 552 VLLRALWKGTHHAFQPSKL 570



 Score = 27.3 bits (59), Expect = 6.6
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 51  LLLRFLWKLTHCSLQPGQL--LVDLLLLRFLWKLTHCSLQPSQLLVDLLH 98
           +LLR LWK TH + QP +L  +V     +F     H + +    L+D LH
Sbjct: 552 VLLRALWKGTHHAFQPSKLKAIVASKASQFTGYAQHDAQEFMAFLLDGLH 601


>gi|31543174 transmembrane protein 86B [Homo sapiens]
          Length = 226

 Score = 27.7 bits (60), Expect = 5.0
 Identities = 39/163 (23%), Positives = 61/163 (37%), Gaps = 22/163 (13%)

Query: 7   RGGTGILTHCSLQ-------LGQLLVDLLLLRFLWKLTHCSLQPGQLLVDLL----LLRF 55
           + G  + THCS Q       L   ++   +   LW +    L     LV  L    L  F
Sbjct: 5   KAGQTLKTHCSAQRPDVCRWLSPFILSCCVYFCLW-IPEDQLSWFAALVKCLPVLCLAGF 63

Query: 56  LWKLT----HCSLQPGQLLVDLLLLRFLWKLTHCSLQPSQLLVDLLHLRFLWKLTHCSLQ 111
           LW ++    +  L  G L+   +    L  +   +  P        HL ++W      LQ
Sbjct: 64  LWVMSPSGGYTQLLQGALVCSAVGDACL--IWPAAFVPGMAAFATAHLLYVWAFGFSPLQ 121

Query: 112 PGQLLVDLLQLRFLWKLTHCSLQPGQLL----VDLLQLRFLWK 150
           PG LL+ +L       L    L+P  +L      L+ +  LW+
Sbjct: 122 PGLLLLIILAPGPYLSLVLQHLEPDMVLPVAAYGLILMAMLWR 164


>gi|190341095 transmembrane protein 63C [Homo sapiens]
          Length = 806

 Score = 26.9 bits (58), Expect = 8.6
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 34  WKLTHCSLQPGQLLVDLLLLRFLWKLTHCSLQPGQLLVDLLLLRFLW 80
           +K   C +QP Q  V  ++  + W++T        +   L + RF W
Sbjct: 360 YKYVQCGVQPQQSSVTTIVKSYYWRVTMAPHPKDIIWKHLSVRRFFW 406


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.333    0.148    0.493 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,236,766
Number of Sequences: 37866
Number of extensions: 306668
Number of successful extensions: 802
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 775
Number of HSP's gapped (non-prelim): 13
length of query: 171
length of database: 18,247,518
effective HSP length: 95
effective length of query: 76
effective length of database: 14,650,248
effective search space: 1113418848
effective search space used: 1113418848
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.