Search of human proteins with 239755575

Search of human proteins with 239755575

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239755575 PREDICTED: similar to mannosyltransferase, partial
[Homo sapiens]
         (256 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755575 PREDICTED: similar to mannosyltransferase, partial ...   533   e-152
gi|41350216 beta-1,4-mannosyltransferase [Homo sapiens]               476   e-135
gi|209954680 hypothetical protein LOC644974 [Homo sapiens]            332   3e-91
gi|62632744 asparagine-linked glycosylation 1-like [Homo sapiens]     259   2e-69
gi|197245437 eukaryotic translation initiation factor 2-alpha ki...    30   1.6  
gi|11125768 eukaryotic translation initiation factor 2-alpha kin...    30   1.6  
gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]    30   2.7  
gi|31377468 dedicator of cytokinesis 2 [Homo sapiens]                  29   3.5  

>gi|239755575 PREDICTED: similar to mannosyltransferase, partial
           [Homo sapiens]
          Length = 256

 Score =  533 bits (1374), Expect = e-152
 Identities = 256/256 (100%), Positives = 256/256 (100%)

Query: 1   CRAVTIYDKPASFFKETPLDLQHRLFMKLGGTHSPFRARSEPEEPATEPSAFMEWDAGSG 60
           CRAVTIYDKPASFFKETPLDLQHRLFMKLGGTHSPFRARSEPEEPATEPSAFMEWDAGSG
Sbjct: 1   CRAVTIYDKPASFFKETPLDLQHRLFMKLGGTHSPFRARSEPEEPATEPSAFMEWDAGSG 60

Query: 61  LVMLLREQPALLVSSTGWTEDEDFSILLAALEKFEQLTVDGHNLPSLVCVITGQGPLTEY 120
           LVMLLREQPALLVSSTGWTEDEDFSILLAALEKFEQLTVDGHNLPSLVCVITGQGPLTEY
Sbjct: 61  LVMLLREQPALLVSSTGWTEDEDFSILLAALEKFEQLTVDGHNLPSLVCVITGQGPLTEY 120

Query: 121 YSCPIHQKHFQHIQVCNPWLEAEDYPLLLGSVDLGVCLHTSSSGLDLPMKVVDMFGCCLP 180
           YSCPIHQKHFQHIQVCNPWLEAEDYPLLLGSVDLGVCLHTSSSGLDLPMKVVDMFGCCLP
Sbjct: 121 YSCPIHQKHFQHIQVCNPWLEAEDYPLLLGSVDLGVCLHTSSSGLDLPMKVVDMFGCCLP 180

Query: 181 ACAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLR 240
           ACAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLR
Sbjct: 181 ACAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLR 240

Query: 241 WDERWVQSVLHLVMDT 256
           WDERWVQSVLHLVMDT
Sbjct: 241 WDERWVQSVLHLVMDT 256


>gi|41350216 beta-1,4-mannosyltransferase [Homo sapiens]
          Length = 464

 Score =  476 bits (1226), Expect = e-135
 Identities = 232/255 (90%), Positives = 238/255 (93%)

Query: 2   RAVTIYDKPASFFKETPLDLQHRLFMKLGGTHSPFRARSEPEEPATEPSAFMEWDAGSGL 61
           RAVT+YDKPASFFKETPLDLQHRLFMKLG  HSPFRARSEPE+P TE SAF E DAGSGL
Sbjct: 210 RAVTVYDKPASFFKETPLDLQHRLFMKLGSMHSPFRARSEPEDPVTERSAFTERDAGSGL 269

Query: 62  VMLLREQPALLVSSTGWTEDEDFSILLAALEKFEQLTVDGHNLPSLVCVITGQGPLTEYY 121
           V  LRE+PALLVSST WTEDEDFSILLAALEKFEQLT+DGHNLPSLVCVITG+GPL EYY
Sbjct: 270 VTRLRERPALLVSSTSWTEDEDFSILLAALEKFEQLTLDGHNLPSLVCVITGKGPLREYY 329

Query: 122 SCPIHQKHFQHIQVCNPWLEAEDYPLLLGSVDLGVCLHTSSSGLDLPMKVVDMFGCCLPA 181
           S  IHQKHFQHIQVC PWLEAEDYPLLLGS DLGVCLHTSSSGLDLPMKVVDMFGCCLP 
Sbjct: 330 SRLIHQKHFQHIQVCTPWLEAEDYPLLLGSADLGVCLHTSSSGLDLPMKVVDMFGCCLPV 389

Query: 182 CAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLRW 241
           CAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLRW
Sbjct: 390 CAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLNQFRKNLRESQQLRW 449

Query: 242 DERWVQSVLHLVMDT 256
           DE WVQ+VL LVMDT
Sbjct: 450 DESWVQTVLPLVMDT 464


>gi|209954680 hypothetical protein LOC644974 [Homo sapiens]
          Length = 215

 Score =  332 bits (850), Expect = 3e-91
 Identities = 169/217 (77%), Positives = 175/217 (80%), Gaps = 13/217 (5%)

Query: 3   AVTIYDKPASFFKETPLDLQHRLFMKLGGTHSPFRARSEPEEPATEPSAFMEWDAGSGLV 62
           AVT+YDKPASFFKE PLDLQHRLFMKLG THSPFRARSEPE+P TE SAF E D+GSGLV
Sbjct: 8   AVTVYDKPASFFKEAPLDLQHRLFMKLGSTHSPFRARSEPEDPDTERSAFTERDSGSGLV 67

Query: 63  MLLREQPALLVSSTGWTEDEDFSILLAALEKFEQLTVDGHNLPSLVCVITGQGPLTEYYS 122
             L E+PALLVSST WTE             FEQLT+DG NLPSLVCVITG+GPL EYYS
Sbjct: 68  TRLHERPALLVSSTSWTE-------------FEQLTLDGQNLPSLVCVITGKGPLREYYS 114

Query: 123 CPIHQKHFQHIQVCNPWLEAEDYPLLLGSVDLGVCLHTSSSGLDLPMKVVDMFGCCLPAC 182
             IHQKHFQHIQVC PWLE    P LLGSVDL VCL TSSSGLDLPMKVVDMF CCLPAC
Sbjct: 115 RLIHQKHFQHIQVCIPWLEGRGLPPLLGSVDLDVCLDTSSSGLDLPMKVVDMFRCCLPAC 174

Query: 183 AVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNF 219
           AVNFKCLHELVKHEEN LVFEDSEELAAQLQ     F
Sbjct: 175 AVNFKCLHELVKHEENRLVFEDSEELAAQLQYFADAF 211


>gi|62632744 asparagine-linked glycosylation 1-like [Homo sapiens]
          Length = 187

 Score =  259 bits (661), Expect = 2e-69
 Identities = 144/208 (69%), Positives = 147/208 (70%), Gaps = 51/208 (24%)

Query: 48  EPSAFMEWDAGSGLVMLLREQPALLVSSTGWTEDEDFSILLAALEKFEQLTVDGHNLPSL 107
           E SAFME DAGS LVM LRE PALLVSSTGWTE             FEQLT+DGHNLPSL
Sbjct: 2   ERSAFMELDAGSRLVMHLREWPALLVSSTGWTE-------------FEQLTLDGHNLPSL 48

Query: 108 VCVITGQGPLTEYYSCPIHQKHFQHIQVCNPWLEAEDYPLLLGSVDLGVCLHTSSSGLDL 167
           VCVITG                                     SVDLGVCLH SSSGLDL
Sbjct: 49  VCVITG-------------------------------------SVDLGVCLHMSSSGLDL 71

Query: 168 PMKVVDMFGCCLPACAVNFKCLHELVKHEENGLVFEDSEELAAQLQMLFSNFPDPAGKLN 227
           PMKVVDMFGCCLP CAVNFKCLHELVKHEENGLVFEDSEELAA LQMLFSNFPDPAGKLN
Sbjct: 72  PMKVVDMFGCCLPVCAVNFKCLHELVKHEENGLVFEDSEELAA-LQMLFSNFPDPAGKLN 130

Query: 228 QFRKNLRESQQLRWDERWVQSVLHLVMD 255
           QF K+LRESQQLRWDE WVQ+VL LVMD
Sbjct: 131 QFWKDLRESQQLRWDESWVQTVLPLVMD 158


>gi|197245437 eukaryotic translation initiation factor 2-alpha
           kinase 1 isoform b [Homo sapiens]
          Length = 629

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 65  LREQPALLVSSTGWTEDEDFSILLAALEKFEQLTVDGHNLPSLVCVITGQGPLTEYYSCP 124
           L   P  L  S    + + +S+ +  LE F+    +      L  + TGQ P +    CP
Sbjct: 494 LYASPEQLEGSEYDAKSDMYSLGVVLLELFQPFGTEMERAEVLTGLRTGQLPESLRKRCP 553

Query: 125 IHQKHFQHIQVCNPWLEAEDYPLLLGSVDLGVCLHTSSSGLDLPMKVVD 173
           +  K+ QH+   N    +   P  +  +   +  ++ +  L L MK+++
Sbjct: 554 VQAKYIQHLTRRN----SSQRPSAIQLLQSELFQNSGNVNLTLQMKIIE 598


>gi|11125768 eukaryotic translation initiation factor 2-alpha kinase
           1 isoform a [Homo sapiens]
          Length = 630

 Score = 30.4 bits (67), Expect = 1.6
 Identities = 24/109 (22%), Positives = 46/109 (42%), Gaps = 4/109 (3%)

Query: 65  LREQPALLVSSTGWTEDEDFSILLAALEKFEQLTVDGHNLPSLVCVITGQGPLTEYYSCP 124
           L   P  L  S    + + +S+ +  LE F+    +      L  + TGQ P +    CP
Sbjct: 495 LYASPEQLEGSEYDAKSDMYSLGVVLLELFQPFGTEMERAEVLTGLRTGQLPESLRKRCP 554

Query: 125 IHQKHFQHIQVCNPWLEAEDYPLLLGSVDLGVCLHTSSSGLDLPMKVVD 173
           +  K+ QH+   N    +   P  +  +   +  ++ +  L L MK+++
Sbjct: 555 VQAKYIQHLTRRN----SSQRPSAIQLLQSELFQNSGNVNLTLQMKIIE 599


>gi|122937426 RGP1 retrograde golgi transport homolog [Homo sapiens]
          Length = 431

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 157 CLHTSSSGLDLPMKVVDMFGCCLPACAVNFKCLHELVKHEENGLV 201
           CLHT+ +   LP+ +    G C    ++ ++   E V   E GLV
Sbjct: 333 CLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEFVTSREPGLV 377


>gi|31377468 dedicator of cytokinesis 2 [Homo sapiens]
          Length = 1830

 Score = 29.3 bits (64), Expect = 3.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)

Query: 100 DGHNLPSLVCVITGQGPLTEYYSCPIHQ 127
           DG  LP+ +CV  G  P+ EY S   +Q
Sbjct: 456 DGKTLPNAICVGAGDKPMNEYRSVVYYQ 483


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,019,098
Number of Sequences: 37866
Number of extensions: 526969
Number of successful extensions: 1324
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1311
Number of HSP's gapped (non-prelim): 9
length of query: 256
length of database: 18,247,518
effective HSP length: 100
effective length of query: 156
effective length of database: 14,460,918
effective search space: 2255903208
effective search space used: 2255903208
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.