Search of human proteins with 239747880

Search of human proteins with 239747880

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747880 PREDICTED: hypothetical protein isoform 1 [Homo
sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747880 PREDICTED: hypothetical protein isoform 1 [Homo sap...   246   4e-66
gi|239747878 PREDICTED: hypothetical protein isoform 2 [Homo sap...   174   2e-44
gi|31542658 fatty acyl CoA reductase 2 [Homo sapiens]                 122   5e-29
gi|24308324 fatty acyl CoA reductase 1 [Homo sapiens]                  87   4e-18
gi|94967014 olfactory receptor, family 4, subfamily A, member 5 ...    27   3.5  
gi|118918421 ets variant gene 4 (E1A enhancer binding protein, E...    26   7.8  
gi|24307883 ets variant gene 4 (E1A enhancer binding protein, E1...    26   7.8  

>gi|239747880 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 113

 Score =  246 bits (627), Expect = 4e-66
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MCGEVSWYKGKKNRPKSVLVYHCTSGNLNPCNRGKMGFQVLATFEIPIPFERALTRPYAD 60
           MCGEVSWYKGKKNRPKSVLVYHCTSGNLNPCNRGKMGFQVLATFEIPIPFERALTRPYAD
Sbjct: 1   MCGEVSWYKGKKNRPKSVLVYHCTSGNLNPCNRGKMGFQVLATFEIPIPFERALTRPYAD 60

Query: 61  FTTSNFRTQYWNAISQQAPAIIYDFYLWLTGRKPSYRRKIPSSTQFYKWRNRS 113
           FTTSNFRTQYWNAISQQAPAIIYDFYLWLTGRKPSYRRKIPSSTQFYKWRNRS
Sbjct: 61  FTTSNFRTQYWNAISQQAPAIIYDFYLWLTGRKPSYRRKIPSSTQFYKWRNRS 113


>gi|239747878 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 148

 Score =  174 bits (440), Expect = 2e-44
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 15  PKSVLVYHCTSGNLNPCNRGKMGFQVLATFEIPIPFERALTRPYADFTTSNFRTQYWNAI 74
           PKSVLVYHCTSGNLNPCNRGKMGFQVLATFEIPIPFERALTRPYADFTTSNFRTQYWNAI
Sbjct: 32  PKSVLVYHCTSGNLNPCNRGKMGFQVLATFEIPIPFERALTRPYADFTTSNFRTQYWNAI 91

Query: 75  SQQAPAIIYDFYLWLTGRKP 94
           SQQAPAIIYDFYLWLTGRKP
Sbjct: 92  SQQAPAIIYDFYLWLTGRKP 111


>gi|31542658 fatty acyl CoA reductase 2 [Homo sapiens]
          Length = 515

 Score =  122 bits (307), Expect = 5e-29
 Identities = 61/90 (67%), Positives = 70/90 (77%), Gaps = 2/90 (2%)

Query: 5   VSWYKGKKNRPKSVLVYHCTSGNLNPCNRGKMGFQVLATFEIPIPFERALTRPYADFTTS 64
           V WY    +RPKS LVYH TSGN+NPCN  KMG QVLATFE  IPFER   RP A+FT++
Sbjct: 288 VGWYTAV-HRPKSTLVYHITSGNMNPCNWHKMGVQVLATFE-KIPFERPFRRPNANFTSN 345

Query: 65  NFRTQYWNAISQQAPAIIYDFYLWLTGRKP 94
           +F +QYWNA+S +APAIIYD YL LTGRKP
Sbjct: 346 SFTSQYWNAVSHRAPAIIYDCYLRLTGRKP 375


>gi|24308324 fatty acyl CoA reductase 1 [Homo sapiens]
          Length = 515

 Score = 86.7 bits (213), Expect = 4e-18
 Identities = 39/95 (41%), Positives = 64/95 (67%), Gaps = 2/95 (2%)

Query: 6   SWYKGKKNRPKSVLVYHCTSGNLNPCNRGKMGFQVLATFEIPIPFERALTRPYADFTTSN 65
           +WY G  NRP++++VY+CT+G+ NP + G++ + V++TF+   P E+A  RP  + T+++
Sbjct: 289 AWYSGV-NRPRNIMVYNCTTGSTNPFHWGEVEYHVISTFKRN-PLEQAFRRPNVNLTSNH 346

Query: 66  FRTQYWNAISQQAPAIIYDFYLWLTGRKPSYRRKI 100
               YW A+S +APA +YD YL +TGR P   + I
Sbjct: 347 LLYHYWIAVSHKAPAFLYDIYLRMTGRSPRMMKTI 381


>gi|94967014 olfactory receptor, family 4, subfamily A, member 5
           [Homo sapiens]
          Length = 315

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 28  LNPCNRGKMGFQVLATFEIPIPFERALTRPYADFTTSNFRTQYWNAISQQAPAIIY 83
           L+ C+ G     V+  F +P  F     RP ++F T  F T ++  I+     +IY
Sbjct: 234 LSTCSSGST---VVVLFFVPCIF--IYVRPVSNFPTDKFMTVFYTIITHMLSPLIY 284


>gi|118918421 ets variant gene 4 (E1A enhancer binding protein,
           E1AF) [Homo sapiens]
          Length = 484

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 46  IPIPFERALTRPYADFTTSNFRTQYWNAISQQA--PAI 81
           +P P++  L+ P   +   +F+ +Y + + +QA  PA+
Sbjct: 205 LPAPYQHQLSEPCPPYPQQSFKQEYHDPLYEQAGQPAV 242


>gi|24307883 ets variant gene 4 (E1A enhancer binding protein, E1AF)
           [Homo sapiens]
          Length = 484

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 10/38 (26%), Positives = 22/38 (57%), Gaps = 2/38 (5%)

Query: 46  IPIPFERALTRPYADFTTSNFRTQYWNAISQQA--PAI 81
           +P P++  L+ P   +   +F+ +Y + + +QA  PA+
Sbjct: 205 LPAPYQHQLSEPCPPYPQQSFKQEYHDPLYEQAGQPAV 242


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.136    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,540,809
Number of Sequences: 37866
Number of extensions: 171434
Number of successful extensions: 255
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 7
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.