Search of human proteins with 239745993

Search of human proteins with 239745993

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745993 PREDICTED: hypothetical protein LOC441806 [Homo
sapiens]
         (95 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239745993 PREDICTED: hypothetical protein LOC441806 [Homo sap...   197   1e-51
gi|169212891 PREDICTED: similar to hCG1644617 [Homo sapiens]          195   6e-51
gi|239751495 PREDICTED: similar to hCG1644617 [Homo sapiens]          195   6e-51
gi|156631005 proteasome 26S non-ATPase subunit 8 [Homo sapiens]       148   8e-37

>gi|239745993 PREDICTED: hypothetical protein LOC441806 [Homo
          sapiens]
          Length = 95

 Score =  197 bits (502), Expect = 1e-51
 Identities = 95/95 (100%), Positives = 95/95 (100%)

Query: 1  MELEWLPATDTQTNAYIKRPVSLEPYLMEGGYNKVFLAKGNIPAKSYTFIHILLDTIRDE 60
          MELEWLPATDTQTNAYIKRPVSLEPYLMEGGYNKVFLAKGNIPAKSYTFIHILLDTIRDE
Sbjct: 1  MELEWLPATDTQTNAYIKRPVSLEPYLMEGGYNKVFLAKGNIPAKSYTFIHILLDTIRDE 60

Query: 61 MAGCIEKAYEKILFTKATWILFLNTPKQMMDNTKK 95
          MAGCIEKAYEKILFTKATWILFLNTPKQMMDNTKK
Sbjct: 61 MAGCIEKAYEKILFTKATWILFLNTPKQMMDNTKK 95


>gi|169212891 PREDICTED: similar to hCG1644617 [Homo sapiens]
          Length = 95

 Score =  195 bits (496), Expect = 6e-51
 Identities = 94/95 (98%), Positives = 94/95 (98%)

Query: 1  MELEWLPATDTQTNAYIKRPVSLEPYLMEGGYNKVFLAKGNIPAKSYTFIHILLDTIRDE 60
          MELEWLPATDTQTNAYIKRPVSLEPYL EGGYNKVFLAKGNIPAKSYTFIHILLDTIRDE
Sbjct: 1  MELEWLPATDTQTNAYIKRPVSLEPYLKEGGYNKVFLAKGNIPAKSYTFIHILLDTIRDE 60

Query: 61 MAGCIEKAYEKILFTKATWILFLNTPKQMMDNTKK 95
          MAGCIEKAYEKILFTKATWILFLNTPKQMMDNTKK
Sbjct: 61 MAGCIEKAYEKILFTKATWILFLNTPKQMMDNTKK 95


>gi|239751495 PREDICTED: similar to hCG1644617 [Homo sapiens]
          Length = 95

 Score =  195 bits (496), Expect = 6e-51
 Identities = 94/95 (98%), Positives = 94/95 (98%)

Query: 1  MELEWLPATDTQTNAYIKRPVSLEPYLMEGGYNKVFLAKGNIPAKSYTFIHILLDTIRDE 60
          MELEWLPATDTQTNAYIKRPVSLEPYL EGGYNKVFLAKGNIPAKSYTFIHILLDTIRDE
Sbjct: 1  MELEWLPATDTQTNAYIKRPVSLEPYLKEGGYNKVFLAKGNIPAKSYTFIHILLDTIRDE 60

Query: 61 MAGCIEKAYEKILFTKATWILFLNTPKQMMDNTKK 95
          MAGCIEKAYEKILFTKATWILFLNTPKQMMDNTKK
Sbjct: 61 MAGCIEKAYEKILFTKATWILFLNTPKQMMDNTKK 95


>gi|156631005 proteasome 26S non-ATPase subunit 8 [Homo sapiens]
          Length = 350

 Score =  148 bits (374), Expect = 8e-37
 Identities = 77/95 (81%), Positives = 81/95 (85%), Gaps = 1/95 (1%)

Query: 2   ELEWLPATDTQTNAYIKRPVSLEPYLMEGGYNKVFLAKGNIPAKSYT-FIHILLDTIRDE 60
           ELE LPA D QTN YIK PVSLE YLMEG YNKVFLAKGNIPA+SYT FI ILLDTIRDE
Sbjct: 211 ELERLPAKDIQTNVYIKHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDILLDTIRDE 270

Query: 61  MAGCIEKAYEKILFTKATWILFLNTPKQMMDNTKK 95
           +AGCIEKAYEKILFT+AT ILF NTPK+M D  KK
Sbjct: 271 IAGCIEKAYEKILFTEATRILFFNTPKKMTDYAKK 305


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.135    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,433,123
Number of Sequences: 37866
Number of extensions: 117418
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 175
Number of HSP's gapped (non-prelim): 4
length of query: 95
length of database: 18,247,518
effective HSP length: 66
effective length of query: 29
effective length of database: 15,748,362
effective search space: 456702498
effective search space used: 456702498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.