Search of human proteins with 239745350

Search of human proteins with 239745350

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745350 PREDICTED: hypothetical protein XP_002343443 [Homo
sapiens]
         (45 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239745350 PREDICTED: hypothetical protein XP_002343443 [Homo ...    94   3e-20
gi|239745348 PREDICTED: hypothetical protein XP_002343431 [Homo ...    70   4e-13
gi|239740967 PREDICTED: hypothetical protein XP_002342051 [Homo ...    70   4e-13
gi|239743668 PREDICTED: hypothetical protein XP_002342944 [Homo ...    68   1e-12
gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Ho...    40   5e-04
gi|239755744 PREDICTED: similar to Putative ATP-dependent RNA he...    39   7e-04
gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    39   7e-04
gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    39   7e-04
gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11 iso...    39   7e-04

>gi|239745350 PREDICTED: hypothetical protein XP_002343443 [Homo
          sapiens]
          Length = 45

 Score = 93.6 bits (231), Expect = 3e-20
 Identities = 45/45 (100%), Positives = 45/45 (100%)

Query: 1  MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEAGPSGTKGILPA 45
          MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEAGPSGTKGILPA
Sbjct: 1  MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEAGPSGTKGILPA 45


>gi|239745348 PREDICTED: hypothetical protein XP_002343431 [Homo
          sapiens]
          Length = 133

 Score = 70.1 bits (170), Expect = 4e-13
 Identities = 33/34 (97%), Positives = 34/34 (100%)

Query: 1  MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEA 34
          MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAE+
Sbjct: 23 MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAES 56


>gi|239740967 PREDICTED: hypothetical protein XP_002342051 [Homo
          sapiens]
          Length = 133

 Score = 70.1 bits (170), Expect = 4e-13
 Identities = 33/34 (97%), Positives = 34/34 (100%)

Query: 1  MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEA 34
          MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAE+
Sbjct: 23 MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAES 56


>gi|239743668 PREDICTED: hypothetical protein XP_002342944 [Homo
          sapiens]
          Length = 133

 Score = 68.2 bits (165), Expect = 1e-12
 Identities = 32/34 (94%), Positives = 33/34 (97%)

Query: 1  MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEA 34
          MPGMPFPSIRSPELQKTTADLDH LVSVPSVAE+
Sbjct: 23 MPGMPFPSIRSPELQKTTADLDHNLVSVPSVAES 56


>gi|212549538 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12 [Homo
           sapiens]
          Length = 906

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 20/35 (57%), Positives = 22/35 (62%)

Query: 1   MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEAG 35
           M GMPFP+IRS ELQ+  A LD TL   P  A  G
Sbjct: 795 MVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAHPG 829


>gi|239755744 PREDICTED: similar to Putative ATP-dependent RNA
           helicase DDX11-like protein [Homo sapiens]
          Length = 223

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 20/35 (57%), Positives = 22/35 (62%)

Query: 1   MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEAG 35
           M GMPFP+IRS ELQ+  A LD TL   P  A  G
Sbjct: 112 MVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAPPG 146


>gi|100913204 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 2 [Homo sapiens]
          Length = 856

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 20/35 (57%), Positives = 22/35 (62%)

Query: 1   MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEAG 35
           M GMPFP+IRS ELQ+  A LD TL   P  A  G
Sbjct: 745 MVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAPPG 779


>gi|100913202 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 1 [Homo sapiens]
          Length = 906

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 20/35 (57%), Positives = 22/35 (62%)

Query: 1   MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEAG 35
           M GMPFP+IRS ELQ+  A LD TL   P  A  G
Sbjct: 795 MVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAPPG 829


>gi|132566527 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11
           isoform 3 [Homo sapiens]
          Length = 970

 Score = 39.3 bits (90), Expect = 7e-04
 Identities = 20/38 (52%), Positives = 22/38 (57%)

Query: 1   MPGMPFPSIRSPELQKTTADLDHTLVSVPSVAEAGPSG 38
           M GMPFP+IRS ELQ+  A LD TL   P     G  G
Sbjct: 795 MVGMPFPNIRSAELQEKMAYLDQTLSPRPGTPREGSGG 832


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.311    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,192,780
Number of Sequences: 37866
Number of extensions: 74014
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132
Number of HSP's gapped (non-prelim): 9
length of query: 45
length of database: 18,247,518
effective HSP length: 19
effective length of query: 26
effective length of database: 17,528,064
effective search space: 455729664
effective search space used: 455729664
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.